| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102612
Identifier: 222102612
GI number: 222102612
Start: 219073
End: 219225
Strand: Direct
Name: 222102612
Synonym: Avi_7264
Alternate gene names: NA
Gene position: 219073-219225 (Clockwise)
Preceding gene: 222102610
Following gene: 222102621
Centisome position: 34.68
GC content: 53.59
Gene sequence:
>153_bases GTGAAGGTTCGCAACAGCCGGGCATATCTTTACCGGGCTGTCGACAAGCTCCGAAACACGATCGATTTCTATCTGTCGCC GACCCGCACTGCCAAAACGGCCAATCGCTTTCTTGGCAATGACCTAGTGTTAGCACTGCCTGACCATGGCTAA
Upstream 100 bases:
>100_bases GTCGCGCTTTGCCGCGCCATAGGGGGCTGGAACAAGGTCCGTTCTCACAAACACCTAGCGCCCACCGCAATCAAAAAGCT GTCGCGTTGACAAAACCTAT
Downstream 100 bases:
>100_bases AATTGATCACGCTTTCAAACCGCACCTGAAGCCGGGCAGGATTAATGCCAACTCAAATTCTGATTAATCCAAATTGGAAA TCGACAATCGATCCTTATAG
Product: truncated Tnp
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 50; Mature: 50
Protein sequence:
>50_residues MKVRNSRAYLYRAVDKLRNTIDFYLSPTRTAKTANRFLGNDLVLALPDHG
Sequences:
>Translated_50_residues MKVRNSRAYLYRAVDKLRNTIDFYLSPTRTAKTANRFLGNDLVLALPDHG >Mature_50_residues MKVRNSRAYLYRAVDKLRNTIDFYLSPTRTAKTANRFLGNDLVLALPDHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5754; Mature: 5754
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVRNSRAYLYRAVDKLRNTIDFYLSPTRTAKTANRFLGNDLVLALPDHG CCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCEEEEECCCC >Mature Secondary Structure MKVRNSRAYLYRAVDKLRNTIDFYLSPTRTAKTANRFLGNDLVLALPDHG CCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA