Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 222102610

GI number: 222102610

Start: 217980

End: 218669

Strand: Direct

Name: ydfH [C]

Synonym: Avi_7262

Alternate gene names: 222102610

Gene position: 217980-218669 (Clockwise)

Preceding gene: 222102597

Following gene: 222102612

Centisome position: 34.5

GC content: 49.86

Gene sequence:

>690_bases
ATGAAAGTCGGGAAGAGCAGTCTCTACGACGATCTTAAACGCCAAATTCTGACGATGGAACTCGATCCGGACGAGGATCT
GGACGAAGTCAGCATCAGCGAGAAATATGGACTGTCTCGCACACCTGTGCGTGACATTTTCCGCCGTCTTGCGGGTGAAG
GCTATATCGACATTCGAGAAAACAGAGGCGCTCGGGTCGCTCCGTTGAACCATTCGACACTCAGACACTTCTTCCTCGTT
GCGCCGATGATATACGCGGCCATCGGTCGGCTGGCGGTTCAAAATTTCAAACCCAAGCAACTGTCCGAGTTGAGTGACAC
ACAGGAACGATTTCGTGCCGCTAGCCACAACGCTGACACCCTGGCAATGGTTCTGGAGAATAACAGATTCCACGCCATCA
TGGGCGAAATGTCCGGTAACGTTTACCTGCAACCGAGCTTAAGACGTCTTCTCGTGGACCATGCCCGTATAGGGCAAACC
TTCTTCCGTCCACGAAATGATGACATGCAGCAGCGTCTTCGGTTGGCAACCCAACATCATGATGGCTTTATTGCATCCAT
TAAAAGCCATGATGAAAATGCTGTGGTTGATCTCGTTTTCCAGCATTGGGAATTGTCACGAGAGAACATGGAATTGTATG
TTGTGCCTGATAACATGACAGCGGATTTACCTGTTAAATTGGCACCGTAA

Upstream 100 bases:

>100_bases
GCGTTGGCGTGTCGGCACGGGCAGGCGGACGCTGATTGATCTCCCGAATGGTCGCAAAGCGATTGAATTGCAATGGCCTT
CCGTGTGACGAGGATGTGAA

Downstream 100 bases:

>100_bases
AGTTAACCGACACGGGTCAAAAATATTGCGCTCGGCTTTCGCTTATGCGGTTTGCAGGCATGCGATTTCGTTCCACATCT
GCATGGCTCGGGTTCTCAGT

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Domain-Containing Protein; Regulatory Protein; FCD Domain Protein; HTH-Type Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; GntR-Like; Transcription Regulator HTH GntR; Regulatory Protein GntR; Transcription Regulator Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Transcriptional Regulator GntR; Transcriptional Regulator YdhC; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKVGKSSLYDDLKRQILTMELDPDEDLDEVSISEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVAPLNHSTLRHFFLV
APMIYAAIGRLAVQNFKPKQLSELSDTQERFRAASHNADTLAMVLENNRFHAIMGEMSGNVYLQPSLRRLLVDHARIGQT
FFRPRNDDMQQRLRLATQHHDGFIASIKSHDENAVVDLVFQHWELSRENMELYVVPDNMTADLPVKLAP

Sequences:

>Translated_229_residues
MKVGKSSLYDDLKRQILTMELDPDEDLDEVSISEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVAPLNHSTLRHFFLV
APMIYAAIGRLAVQNFKPKQLSELSDTQERFRAASHNADTLAMVLENNRFHAIMGEMSGNVYLQPSLRRLLVDHARIGQT
FFRPRNDDMQQRLRLATQHHDGFIASIKSHDENAVVDLVFQHWELSRENMELYVVPDNMTADLPVKLAP
>Mature_229_residues
MKVGKSSLYDDLKRQILTMELDPDEDLDEVSISEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVAPLNHSTLRHFFLV
APMIYAAIGRLAVQNFKPKQLSELSDTQERFRAASHNADTLAMVLENNRFHAIMGEMSGNVYLQPSLRRLLVDHARIGQT
FFRPRNDDMQQRLRLATQHHDGFIASIKSHDENAVVDLVFQHWELSRENMELYVVPDNMTADLPVKLAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26314; Mature: 26314

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGKSSLYDDLKRQILTMELDPDEDLDEVSISEKYGLSRTPVRDIFRRLAGEGYIDIRE
CCCCHHHHHHHHHHHEEEEECCCCCCHHHCCCHHHCCCCCCCHHHHHHHHCCCCEEEEEC
NRGARVAPLNHSTLRHFFLVAPMIYAAIGRLAVQNFKPKQLSELSDTQERFRAASHNADT
CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCE
LAMVLENNRFHAIMGEMSGNVYLQPSLRRLLVDHARIGQTFFRPRNDDMQQRLRLATQHH
EEEEEECCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DGFIASIKSHDENAVVDLVFQHWELSRENMELYVVPDNMTADLPVKLAP
CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECC
>Mature Secondary Structure
MKVGKSSLYDDLKRQILTMELDPDEDLDEVSISEKYGLSRTPVRDIFRRLAGEGYIDIRE
CCCCHHHHHHHHHHHEEEEECCCCCCHHHCCCHHHCCCCCCCHHHHHHHHCCCCEEEEEC
NRGARVAPLNHSTLRHFFLVAPMIYAAIGRLAVQNFKPKQLSELSDTQERFRAASHNADT
CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCE
LAMVLENNRFHAIMGEMSGNVYLQPSLRRLLVDHARIGQTFFRPRNDDMQQRLRLATQHH
EEEEEECCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DGFIASIKSHDENAVVDLVFQHWELSRENMELYVVPDNMTADLPVKLAP
CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA