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The map label for this gene is nocM [H]

Identifier: 222102596

GI number: 222102596

Start: 202667

End: 203359

Strand: Direct

Name: nocM [H]

Synonym: Avi_7241

Alternate gene names: 222102596

Gene position: 202667-203359 (Clockwise)

Preceding gene: 222102595

Following gene: 222102597

Centisome position: 32.08

GC content: 58.73

Gene sequence:

>693_bases
ATGATCGATTTTGGGTTTTTCTTTGAGATCATTCCAAAACTGCTGTCGGGGCTGCCTCTGACCTTGACGCTCGCTGGCAC
CTCGATCGTCTGTGGCTTTGTTCTTGCCCTCGTGCTGGCCCTTGTGCAACAGGGCGAACGGCGGTGGGTTGTCTGGCCAG
TTCGCACCTTCGTCGCGGTTTTTCGGGGCACGCCGCTGCTCGTCCAGATCTTTTTGATTTACTATGGCCTTGGACAGTTC
CGCCCTTCGTTGCAGGCGGCCGGCCTTTGGTGGCTGTTCCGTGAACCCTATTGGTGCGCGATATTGGCGCTCACCCTGAA
CACCGCAGCCTATGGCAGCGAAATTCTGCGCGGTGCGATCCGCAATGTGCCCAGAGGGCTGATTGAGGCCGCCTCCGCGC
TCGGGATGTCGCGGCTTGCCAACCTGCGCTTCATCATCCTGCCGCTGGCTCTGCGCCAGGCCATCCCGGCCTATGGCAAC
GAGATCATTCTGATGGTCAAGGGCACGTCGCTGGCGTCAATTATCACATTGATGGAGGTGACTGGCATAGCGCAGGGGCT
TATTTCCCAAAGCTATCGCGCCATTGAGGTCTTCATGGCCGCAGGGGCGATCTATCTGCTGCTCAATTTCATCATCGTGC
GGGCGCTCACCACGCTCGAAGCCAGACTGACACTGTATCGGACCCGCAGCTGA

Upstream 100 bases:

>100_bases
TTTATCTGGCCGCCGCATGCCTCTATTTTGTGATGGCGGGCGTAACGGGCCGTTTCTTCCGCAGTGCTGAAGTGAGAACT
TCGCGGGGGATCCTGCACTC

Downstream 100 bases:

>100_bases
CGCGATTTATTCGAATTTTCAGACGAGGAGACTTAAAAGACATGCGCAATTTCGAAAAGCCAACGCGCTCAGTGGCGGTG
TCGACTGACGCCATGGCAGC

Product: ABC transporter membrane spanning protein (nopaline)

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIDFGFFFEIIPKLLSGLPLTLTLAGTSIVCGFVLALVLALVQQGERRWVVWPVRTFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAAGLWWLFREPYWCAILALTLNTAAYGSEILRGAIRNVPRGLIEAASALGMSRLANLRFIILPLALRQAIPAYGN
EIILMVKGTSLASIITLMEVTGIAQGLISQSYRAIEVFMAAGAIYLLLNFIIVRALTTLEARLTLYRTRS

Sequences:

>Translated_230_residues
MIDFGFFFEIIPKLLSGLPLTLTLAGTSIVCGFVLALVLALVQQGERRWVVWPVRTFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAAGLWWLFREPYWCAILALTLNTAAYGSEILRGAIRNVPRGLIEAASALGMSRLANLRFIILPLALRQAIPAYGN
EIILMVKGTSLASIITLMEVTGIAQGLISQSYRAIEVFMAAGAIYLLLNFIIVRALTTLEARLTLYRTRS
>Mature_230_residues
MIDFGFFFEIIPKLLSGLPLTLTLAGTSIVCGFVLALVLALVQQGERRWVVWPVRTFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAAGLWWLFREPYWCAILALTLNTAAYGSEILRGAIRNVPRGLIEAASALGMSRLANLRFIILPLALRQAIPAYGN
EIILMVKGTSLASIITLMEVTGIAQGLISQSYRAIEVFMAAGAIYLLLNFIIVRALTTLEARLTLYRTRS

Specific function: Component of the octopine active transport system probably consisting of four subunits:Q, M, P and T [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787086, Length=224, Percent_Identity=44.1964285714286, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=40.3846153846154, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1788226, Length=214, Percent_Identity=37.3831775700935, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787030, Length=224, Percent_Identity=33.4821428571429, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787087, Length=235, Percent_Identity=27.6595744680851, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=30.2752293577982, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786874, Length=215, Percent_Identity=29.3023255813954, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786873, Length=202, Percent_Identity=30.6930693069307, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082239, Length=231, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=32.8, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25440; Mature: 25440

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFGFFFEIIPKLLSGLPLTLTLAGTSIVCGFVLALVLALVQQGERRWVVWPVRTFVAV
CCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
FRGTPLLVQIFLIYYGLGQFRPSLQAAGLWWLFREPYWCAILALTLNTAAYGSEILRGAI
HCCCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RNVPRGLIEAASALGMSRLANLRFIILPLALRQAIPAYGNEIILMVKGTSLASIITLMEV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
TGIAQGLISQSYRAIEVFMAAGAIYLLLNFIIVRALTTLEARLTLYRTRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIDFGFFFEIIPKLLSGLPLTLTLAGTSIVCGFVLALVLALVQQGERRWVVWPVRTFVAV
CCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
FRGTPLLVQIFLIYYGLGQFRPSLQAAGLWWLFREPYWCAILALTLNTAAYGSEILRGAI
HCCCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RNVPRGLIEAASALGMSRLANLRFIILPLALRQAIPAYGNEIILMVKGTSLASIITLMEV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
TGIAQGLISQSYRAIEVFMAAGAIYLLLNFIIVRALTTLEARLTLYRTRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655707; 1732218 [H]