Click here to switch to the map view.

The map label for this gene is yliB [C]

Identifier: 222102577

GI number: 222102577

Start: 183191

End: 184789

Strand: Reverse

Name: yliB [C]

Synonym: Avi_7214

Alternate gene names: 222102577

Gene position: 184789-183191 (Counterclockwise)

Preceding gene: 222102578

Following gene: 222102576

Centisome position: 29.25

GC content: 55.53

Gene sequence:

>1599_bases
ATGACCATCACCCTAACCCGCCGCAAGGCTTTGTTGCTCGGTGCCGCCCTTGGTGGCTCAACCCTGTTGCCAGCCTTTGG
CTTTGCCGCTGACACCTCGAAGAAAGGCGGCATTGCCACCTTTGTGGCCGTGGGCGAGCCAACAACGCTGGTGCCTTTGT
CTGACACCAACACCAGAACCCGCGCCATCTCCACCAAAATCCTCGAAGGTTTGGTGCGGTTTGATAGCAGTTTCAAACCC
CATCCGGTTCTGGCCGAATCCTGGGAGCTGTCCGCCGATGGCTTGCGCTTCACCTTCCGTCTGCGCAAGGGCGTGAAATG
GCATGATGGCAAGGATTTCACCTCAGCCGACGTGAAGTTTTCGCTGCTGGCCTTCAAGAAAGTAGGCCCGCGTGGCCGTG
TGACCTTTGCCAATGTATCGGATGTGGAAACGCCGGACACGTTGACCGCCGTTGTGGTGCTGGCCAAGCCAGCCCCCTAT
CTGCTGCGCGCTTTGACGGGAGGCGAAACGCCAATCCTTCCCGCCCACGCCTACGCCTACGCCACGGACAATTATGCAGA
AAGCCCCAATGGCAATGCGCCGATTGGCACTGGTCCCTTTGTGTTTGAAGAATGGAAGCGCGGCAGCTACGTAAAACTCA
AGCGCAACCCGAATTACTGGCAGGCGGGCCTGCCGCATCTGGATGGTTTCGTGGCCCGGTTTGTGGGCGATGGCGCTGCC
GCCTCGATTGCGCTTGAAACCGGCGAGGCCGATTACAGCACGGATGTATCCTTCAACGATATTGAGCGGCTGAAGCAGAG
CAAGACCCTGACGGTGGATATCTACACCGACGCCTATCTCAATAATGCTCAGGTGTTTGAGTTCAATCTCGACAACCCGA
TCCTTGCCAAAGCAGAGGTGCGCCATGCGCTGGCCCATGCCATTGATCGCAATTTCATCATTGATGCGATTTTCTACGGC
ACGGCGAAACCAGCCTTTTCCAACATTCCGGCGGTGTTCAAAGACTATAACGACGAAGCGCCATTCCAATACGAGTTCGA
CCTCAAAAAAGCCAATGAACTGCTGGACAAGGCCGGACATCCGAAGGATGCCAATGGCATCCGTTTCTCCCTGCGGCTGA
CCTATATTCCCGGCGATAGCTTCAAGAAAACCGCTGAATATTTCCGCTCCACCTTCGGCAAGCTCGGCGTGAAGATCGAG
ATTGTCGATGGCGATCTCGCCACCTTTATCAAGCGCGTTTACACCGAGCGCGGTTTTGACATCAACCTCAATGGCATCAG
CCGATTGTTTGACCCCACGGCAGGCGTGCAGCGCCTCTACTGGTCGGATGGCATCAAAAATATAGCACCCTATGTCAATG
CCGCTCATTATAACAATCCGAAGGTGGATGACCTTTTTCGCGCCGCTGCCATTGAAGTGGATGAGAAAAAGCGCGACGAG
GAGTTCAAGGAAATCCAGAAAATCACCGGTGCGGACCTACCGAATTTCTCGGTCATTGCCCTTCCCACGGTGATTGCCCG
CAACAAGCGCATCCAAAATCTGGTGACCACCATCGACGTGGCATACAGCGACCTCGCAGAAGCATGGAAGGACAGTTGA

Upstream 100 bases:

>100_bases
GCCCGTCGGGGCAACCCTGTTTTCCCGGCTGGTGGAAAGCAGGCTGAAGGCCGCCTGATCAAAACAAACCCTTTCAAAAA
CACAATAAATGAGGACACCC

Downstream 100 bases:

>100_bases
GCGGATAAGCGCAACACTTCGGATCAATCCCCCTCTCATCTGTGATGGACATCATGGCTCAAGATATACTTTTCCTGCTC
TCTCCCGGCTTTGAAGATGC

Product: ABC transporter substrate binding protein (oligopeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MTITLTRRKALLLGAALGGSTLLPAFGFAADTSKKGGIATFVAVGEPTTLVPLSDTNTRTRAISTKILEGLVRFDSSFKP
HPVLAESWELSADGLRFTFRLRKGVKWHDGKDFTSADVKFSLLAFKKVGPRGRVTFANVSDVETPDTLTAVVVLAKPAPY
LLRALTGGETPILPAHAYAYATDNYAESPNGNAPIGTGPFVFEEWKRGSYVKLKRNPNYWQAGLPHLDGFVARFVGDGAA
ASIALETGEADYSTDVSFNDIERLKQSKTLTVDIYTDAYLNNAQVFEFNLDNPILAKAEVRHALAHAIDRNFIIDAIFYG
TAKPAFSNIPAVFKDYNDEAPFQYEFDLKKANELLDKAGHPKDANGIRFSLRLTYIPGDSFKKTAEYFRSTFGKLGVKIE
IVDGDLATFIKRVYTERGFDINLNGISRLFDPTAGVQRLYWSDGIKNIAPYVNAAHYNNPKVDDLFRAAAIEVDEKKRDE
EFKEIQKITGADLPNFSVIALPTVIARNKRIQNLVTTIDVAYSDLAEAWKDS

Sequences:

>Translated_532_residues
MTITLTRRKALLLGAALGGSTLLPAFGFAADTSKKGGIATFVAVGEPTTLVPLSDTNTRTRAISTKILEGLVRFDSSFKP
HPVLAESWELSADGLRFTFRLRKGVKWHDGKDFTSADVKFSLLAFKKVGPRGRVTFANVSDVETPDTLTAVVVLAKPAPY
LLRALTGGETPILPAHAYAYATDNYAESPNGNAPIGTGPFVFEEWKRGSYVKLKRNPNYWQAGLPHLDGFVARFVGDGAA
ASIALETGEADYSTDVSFNDIERLKQSKTLTVDIYTDAYLNNAQVFEFNLDNPILAKAEVRHALAHAIDRNFIIDAIFYG
TAKPAFSNIPAVFKDYNDEAPFQYEFDLKKANELLDKAGHPKDANGIRFSLRLTYIPGDSFKKTAEYFRSTFGKLGVKIE
IVDGDLATFIKRVYTERGFDINLNGISRLFDPTAGVQRLYWSDGIKNIAPYVNAAHYNNPKVDDLFRAAAIEVDEKKRDE
EFKEIQKITGADLPNFSVIALPTVIARNKRIQNLVTTIDVAYSDLAEAWKDS
>Mature_531_residues
TITLTRRKALLLGAALGGSTLLPAFGFAADTSKKGGIATFVAVGEPTTLVPLSDTNTRTRAISTKILEGLVRFDSSFKPH
PVLAESWELSADGLRFTFRLRKGVKWHDGKDFTSADVKFSLLAFKKVGPRGRVTFANVSDVETPDTLTAVVVLAKPAPYL
LRALTGGETPILPAHAYAYATDNYAESPNGNAPIGTGPFVFEEWKRGSYVKLKRNPNYWQAGLPHLDGFVARFVGDGAAA
SIALETGEADYSTDVSFNDIERLKQSKTLTVDIYTDAYLNNAQVFEFNLDNPILAKAEVRHALAHAIDRNFIIDAIFYGT
AKPAFSNIPAVFKDYNDEAPFQYEFDLKKANELLDKAGHPKDANGIRFSLRLTYIPGDSFKKTAEYFRSTFGKLGVKIEI
VDGDLATFIKRVYTERGFDINLNGISRLFDPTAGVQRLYWSDGIKNIAPYVNAAHYNNPKVDDLFRAAAIEVDEKKRDEE
FKEIQKITGADLPNFSVIALPTVIARNKRIQNLVTTIDVAYSDLAEAWKDS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=534, Percent_Identity=27.1535580524345, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1789966, Length=531, Percent_Identity=26.9303201506591, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1787762, Length=484, Percent_Identity=26.2396694214876, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787551, Length=467, Percent_Identity=26.338329764454, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789397, Length=492, Percent_Identity=23.780487804878, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787495, Length=444, Percent_Identity=24.5495495495495, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082063, Length=439, Percent_Identity=22.0956719817768, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58721; Mature: 58590

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITLTRRKALLLGAALGGSTLLPAFGFAADTSKKGGIATFVAVGEPTTLVPLSDTNTRT
CEEEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHH
RAISTKILEGLVRFDSSFKPHPVLAESWELSADGLRFTFRLRKGVKWHDGKDFTSADVKF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEE
SLLAFKKVGPRGRVTFANVSDVETPDTLTAVVVLAKPAPYLLRALTGGETPILPAHAYAY
EEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCEEEE
ATDNYAESPNGNAPIGTGPFVFEEWKRGSYVKLKRNPNYWQAGLPHLDGFVARFVGDGAA
ECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHCCCCE
ASIALETGEADYSTDVSFNDIERLKQSKTLTVDIYTDAYLNNAQVFEFNLDNPILAKAEV
EEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHH
RHALAHAIDRNFIIDAIFYGTAKPAFSNIPAVFKDYNDEAPFQYEFDLKKANELLDKAGH
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECHHHHHHHHHHCCC
PKDANGIRFSLRLTYIPGDSFKKTAEYFRSTFGKLGVKIEIVDGDLATFIKRVYTERGFD
CCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCE
INLNGISRLFDPTAGVQRLYWSDGIKNIAPYVNAAHYNNPKVDDLFRAAAIEVDEKKRDE
EECCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHEECHHHHHHH
EFKEIQKITGADLPNFSVIALPTVIARNKRIQNLVTTIDVAYSDLAEAWKDS
HHHHHHHHHCCCCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TITLTRRKALLLGAALGGSTLLPAFGFAADTSKKGGIATFVAVGEPTTLVPLSDTNTRT
EEEEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHH
RAISTKILEGLVRFDSSFKPHPVLAESWELSADGLRFTFRLRKGVKWHDGKDFTSADVKF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEE
SLLAFKKVGPRGRVTFANVSDVETPDTLTAVVVLAKPAPYLLRALTGGETPILPAHAYAY
EEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCEEEE
ATDNYAESPNGNAPIGTGPFVFEEWKRGSYVKLKRNPNYWQAGLPHLDGFVARFVGDGAA
ECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHCCCCE
ASIALETGEADYSTDVSFNDIERLKQSKTLTVDIYTDAYLNNAQVFEFNLDNPILAKAEV
EEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHH
RHALAHAIDRNFIIDAIFYGTAKPAFSNIPAVFKDYNDEAPFQYEFDLKKANELLDKAGH
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECHHHHHHHHHHCCC
PKDANGIRFSLRLTYIPGDSFKKTAEYFRSTFGKLGVKIEIVDGDLATFIKRVYTERGFD
CCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCE
INLNGISRLFDPTAGVQRLYWSDGIKNIAPYVNAAHYNNPKVDDLFRAAAIEVDEKKRDE
EECCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHEECHHHHHHH
EFKEIQKITGADLPNFSVIALPTVIARNKRIQNLVTTIDVAYSDLAEAWKDS
HHHHHHHHHCCCCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA