| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is livF [H]
Identifier: 222102482
GI number: 222102482
Start: 79820
End: 80524
Strand: Direct
Name: livF [H]
Synonym: Avi_7089
Alternate gene names: 222102482
Gene position: 79820-80524 (Clockwise)
Preceding gene: 222102481
Following gene: 222102483
Centisome position: 12.63
GC content: 58.72
Gene sequence:
>705_bases ATGGCACCACTTTTGACGTTTGACGATCTGGTTGTGCGCTATGGCGACATTCCTGCGCTGGCGGGGGTCAGTTTTGCCAT GGATGAGGGAGAAACCCTTGCACTTGTCGGGGCCAATGGTGCCGGAAAATCAACCCTTCTCAAGGCGCTGTGCGGCCTTG TTGATCGTTGGGAGGGCGGAATTTCGCTGGATGGCACAGTGATCAAGCCGGGGCAGGTGGAAAGCACCACGGCACGGGGC ATTGCCCTTGTTCCTGAAGGCCGCCTGTTGTTCAACTCTCTGACCATAGAGGAAAATCTCAAGATCGGACAAACCGGCCG CCAAGGCCGCTGGAGTCTGGATGAGATCTACGCACTCTTCCCGATCCTGCATGAGCGACGGCGGCAAAATCCGGGTCATC TTTCGGGAGGGCAACAGCAGATGGTGGCCATCGGCCGTGCCCTCGCATCCAATCCGCGCCTTTTGCTCTGCGATGAAATC TCCCTCGGCCTGTCTCCCAAAGTGACTGAGGATGTGTATGCGGCTCTCGCATCCATTCGCGCCTCCGGCGTGTCCTTGTT GATTGTCGATCAGGACATTGCGCGCGTGTGTTCACGCGCAGACCGGGTGGTCTGCATGCTGAAAGGCCGCGTGAGCCATA TTAGCCCGGCAGCGGGTGTGACCGCCCATACGCTGAGAGATGCCTATTTCGGAGCGGCCCAATGA
Upstream 100 bases:
>100_bases CGCCTCATCCTGATGGATGCCGGGGCCAAGCTGCTCGATGGTCCATTCCACACCGTCTGGCAGGATCCGAAATTGCATCA GATCTACATGGGGGTTCCCG
Downstream 100 bases:
>100_bases CCCTGTCGGATATGCTGGAATTGTTAATACAGGGTTTGACGCTGGGTGGTCTCTATGGCCTCGTGGGTGCTGGCCTTGCC TTGAACTTTGGCGTGCTGAA
Product: ABC transporter nucleotide binding/ATPase protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MAPLLTFDDLVVRYGDIPALAGVSFAMDEGETLALVGANGAGKSTLLKALCGLVDRWEGGISLDGTVIKPGQVESTTARG IALVPEGRLLFNSLTIEENLKIGQTGRQGRWSLDEIYALFPILHERRRQNPGHLSGGQQQMVAIGRALASNPRLLLCDEI SLGLSPKVTEDVYAALASIRASGVSLLIVDQDIARVCSRADRVVCMLKGRVSHISPAAGVTAHTLRDAYFGAAQ
Sequences:
>Translated_234_residues MAPLLTFDDLVVRYGDIPALAGVSFAMDEGETLALVGANGAGKSTLLKALCGLVDRWEGGISLDGTVIKPGQVESTTARG IALVPEGRLLFNSLTIEENLKIGQTGRQGRWSLDEIYALFPILHERRRQNPGHLSGGQQQMVAIGRALASNPRLLLCDEI SLGLSPKVTEDVYAALASIRASGVSLLIVDQDIARVCSRADRVVCMLKGRVSHISPAAGVTAHTLRDAYFGAAQ >Mature_233_residues APLLTFDDLVVRYGDIPALAGVSFAMDEGETLALVGANGAGKSTLLKALCGLVDRWEGGISLDGTVIKPGQVESTTARGI ALVPEGRLLFNSLTIEENLKIGQTGRQGRWSLDEIYALFPILHERRRQNPGHLSGGQQQMVAIGRALASNPRLLLCDEIS LGLSPKVTEDVYAALASIRASGVSLLIVDQDIARVCSRADRVVCMLKGRVSHISPAAGVTAHTLRDAYFGAAQ
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=225, Percent_Identity=32.4444444444444, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=32.4444444444444, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI42741659, Length=225, Percent_Identity=32.8888888888889, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=32.6086956521739, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI9961250, Length=232, Percent_Identity=31.4655172413793, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI42490749, Length=233, Percent_Identity=28.755364806867, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI153792144, Length=203, Percent_Identity=30.0492610837438, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI27436953, Length=205, Percent_Identity=31.219512195122, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262624, Length=176, Percent_Identity=30.6818181818182, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI27262626, Length=176, Percent_Identity=30.6818181818182, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI9955963, Length=220, Percent_Identity=33.1818181818182, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=28.0952380952381, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI21536378, Length=207, Percent_Identity=28.0193236714976, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI105990541, Length=198, Percent_Identity=24.2424242424242, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI134142337, Length=153, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI171184400, Length=226, Percent_Identity=30.0884955752212, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI134142335, Length=153, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI190343023, Length=224, Percent_Identity=31.6964285714286, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=41.1016949152542, Blast_Score=174, Evalue=3e-45, Organism=Escherichia coli, GI1787792, Length=242, Percent_Identity=30.9917355371901, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=31.6964285714286, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=30.0925925925926, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=32.1739130434783, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1790190, Length=209, Percent_Identity=29.1866028708134, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=33.4928229665072, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=28.755364806867, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1789672, Length=226, Percent_Identity=26.5486725663717, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=28.6324786324786, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=32.5581395348837, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789991, Length=233, Percent_Identity=27.4678111587983, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=28.8372093023256, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=32.3008849557522, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI48995001, Length=204, Percent_Identity=30.3921568627451, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787370, Length=202, Percent_Identity=32.6732673267327, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=27.6315789473684, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=32.3404255319149, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788897, Length=211, Percent_Identity=28.9099526066351, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789864, Length=260, Percent_Identity=27.3076923076923, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI48994943, Length=209, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786703, Length=205, Percent_Identity=30.7317073170732, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=30.8755760368664, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788761, Length=208, Percent_Identity=30.2884615384615, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI1790525, Length=218, Percent_Identity=25.6880733944954, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI145693107, Length=245, Percent_Identity=28.9795918367347, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787143, Length=204, Percent_Identity=30.8823529411765, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=26.8722466960352, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=217, Percent_Identity=29.9539170506912, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=27.4774774774775, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788644, Length=227, Percent_Identity=28.6343612334802, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789032, Length=201, Percent_Identity=26.865671641791, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787547, Length=238, Percent_Identity=27.3109243697479, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=28.755364806867, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI48994883, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=30.2439024390244, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=26.5116279069767, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=179, Percent_Identity=27.9329608938547, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=26.7782426778243, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788506, Length=219, Percent_Identity=30.5936073059361, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=25.6410256410256, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786803, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=26.1904761904762, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787112, Length=220, Percent_Identity=30.4545454545455, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790162, Length=223, Percent_Identity=25.5605381165919, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=31.2796208530806, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786653, Length=154, Percent_Identity=30.5194805194805, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1786981, Length=214, Percent_Identity=29.9065420560748, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=32.8703703703704, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=31.7391304347826, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=32.8703703703704, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI212646699, Length=229, Percent_Identity=31.4410480349345, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17541710, Length=243, Percent_Identity=30.0411522633745, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193202349, Length=219, Percent_Identity=31.5068493150685, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25146777, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=30.1801801801802, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71992285, Length=204, Percent_Identity=28.4313725490196, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17558664, Length=184, Percent_Identity=33.695652173913, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193208177, Length=222, Percent_Identity=30.1801801801802, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567269, Length=219, Percent_Identity=29.2237442922374, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533592, Length=222, Percent_Identity=27.4774774774775, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115533608, Length=201, Percent_Identity=27.8606965174129, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569143, Length=184, Percent_Identity=32.6086956521739, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17569145, Length=200, Percent_Identity=31, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71996550, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71984940, Length=220, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115535101, Length=219, Percent_Identity=27.3972602739726, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534520, Length=222, Percent_Identity=26.5765765765766, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17539902, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=7e-14, Organism=Drosophila melanogaster, GI21357907, Length=227, Percent_Identity=31.2775330396476, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI85726357, Length=194, Percent_Identity=31.4432989690722, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24666092, Length=205, Percent_Identity=28.2926829268293, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24653245, Length=202, Percent_Identity=29.2079207920792, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281363262, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24659289, Length=216, Percent_Identity=30.5555555555556, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17136662, Length=221, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24641565, Length=222, Percent_Identity=29.2792792792793, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI221512771, Length=216, Percent_Identity=26.8518518518519, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=203, Percent_Identity=24.6305418719212, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 24860; Mature: 24729
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPLLTFDDLVVRYGDIPALAGVSFAMDEGETLALVGANGAGKSTLLKALCGLVDRWEGG CCCCCCHHHHHHHCCCCCHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC ISLDGTVIKPGQVESTTARGIALVPEGRLLFNSLTIEENLKIGQTGRQGRWSLDEIYALF CCCCCEEECCCCCCCCCCCCEEECCCCCEEEEEEEECCCCEECCCCCCCCCCHHHHHHHH PILHERRRQNPGHLSGGQQQMVAIGRALASNPRLLLCDEISLGLSPKVTEDVYAALASIR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH ASGVSLLIVDQDIARVCSRADRVVCMLKGRVSHISPAAGVTAHTLRDAYFGAAQ HCCEEEEEECHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure APLLTFDDLVVRYGDIPALAGVSFAMDEGETLALVGANGAGKSTLLKALCGLVDRWEGG CCCCCHHHHHHHCCCCCHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC ISLDGTVIKPGQVESTTARGIALVPEGRLLFNSLTIEENLKIGQTGRQGRWSLDEIYALF CCCCCEEECCCCCCCCCCCCEEECCCCCEEEEEEEECCCCEECCCCCCCCCCHHHHHHHH PILHERRRQNPGHLSGGQQQMVAIGRALASNPRLLLCDEISLGLSPKVTEDVYAALASIR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH ASGVSLLIVDQDIARVCSRADRVVCMLKGRVSHISPAAGVTAHTLRDAYFGAAQ HCCEEEEEECHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]