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The map label for this gene is 222102467

Identifier: 222102467

GI number: 222102467

Start: 64988

End: 65404

Strand: Direct

Name: 222102467

Synonym: Avi_7073

Alternate gene names: NA

Gene position: 64988-65404 (Clockwise)

Preceding gene: 222102466

Following gene: 222102473

Centisome position: 10.29

GC content: 51.8

Gene sequence:

>417_bases
ATGTCCTATAAAGTACATATTAAGGCATCGGATGTAATAGATGTTCATGTCGGCTGCCGTATCCGTTTACAGCGTGTGCT
CAAGGGAATGAGTCAGAAGGCGCTCGCCGAAGGGGTCGGTGTAACCTTTCAACAGGTCCAGAAATACGAAACTGGCACAA
ATCGGATTGGCTCAAGCCGGCTTCAGGCCGTCGCCAGAATTCTCAGTGTCCCTGTCGCGTTCTTTTTCGAGGATGGCCCT
CAGAGTTCTTCCCCTTCGCAATTGCCCGAGGCCGGCATCGGCAAGGAAATCACGCGGTTTATTCGTTCAGAGGAGGGGTT
GGCCCTCAATCTTGCTTTCACAAAAATCCAGGATGCCAATGTCAGGCGAAAGGTCATCGGACTGGTGAAGACGCTGGCAA
AAGAGCATGCAGAGTGA

Upstream 100 bases:

>100_bases
CGTTGCATAACCGCGGACAAATTAACAACGGAGGAAGGCACTAACGTCACTTTCCTAAGCCGTGGCAACGTTTTACCTGC
GCAATCCTATTGGAGATTAT

Downstream 100 bases:

>100_bases
GACCGGAATGCGTGCCCAGATGATTGCCGCGAATACGCTGATGGCTTGCTCGGCTGCATCCGAAAGGGCACCGTAAAGTT
AAAGAACTACGGCCAAAGCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSYKVHIKASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARILSVPVAFFFEDGP
QSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIGLVKTLAKEHAE

Sequences:

>Translated_138_residues
MSYKVHIKASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARILSVPVAFFFEDGP
QSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIGLVKTLAKEHAE
>Mature_137_residues
SYKVHIKASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARILSVPVAFFFEDGPQ
SSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIGLVKTLAKEHAE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15164; Mature: 15033

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKVHIKASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSR
CCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHH
LQAVARILSVPVAFFFEDGPQSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDAN
HHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCH
VRRKVIGLVKTLAKEHAE
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYKVHIKASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSR
CEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHH
LQAVARILSVPVAFFFEDGPQSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDAN
HHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCH
VRRKVIGLVKTLAKEHAE
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]