| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102466
Identifier: 222102466
GI number: 222102466
Start: 63440
End: 64354
Strand: Direct
Name: 222102466
Synonym: Avi_7072
Alternate gene names: NA
Gene position: 63440-64354 (Clockwise)
Preceding gene: 222102465
Following gene: 222102467
Centisome position: 10.04
GC content: 52.02
Gene sequence:
>915_bases GTGGTTGGGTTTAGAAATGCCTCATTATCGAGAAGACCTGTTGCTGTCTCCATGTGGGCAGACTTGGCAGTCCTCGGGGT CGCTGTCGTGTGGGGGACTAGCTATCCCGTTGCAAAGGGAGCGCTACTATACGCTCCAGTCTTGATCCTTATTCTTTATC GCTTCCTGATCACGACGATTATCATGATGATCGTAGCGCGTCGCGAGATTGTGGCTATGTCGCGGGGAGATATTCTACGG GGATTTTTACTTGGGTCGATCCTGTTTTCAATTTTCCTTGCAGAAACCTATGGGGTCGCTTTGACGAGTGCGACGAATAC GGCGCTAATCATCTCCCTTTGTGTGATCTTTACACCAATTCTGGACTACGGGTTGTCACGGAAACTTCCGCCGCCTGCCG TTATTGCGAGTGCCATCGTTTGCTGCGTTGGCGTCGGTATCTTGACCGGTGGTATAAACGCCTTCGGTGCAGGTGACTTG CTCGTTTTGGGTGCAGCAGTATTACGAGCCATTATGGTTGTCTCGACAAAGCGGCTTATGTTCGGTCGCCAGATTTCCTC TGCGGCACTCACTGCAATCCAGGGTTTTTCGGTCACAACGCTGACCTTGGTTGTCGTGATCGCTCAATTTGGTGTCGGCA GCATTGCGGTTGATGCCGATCCCCAATTTTGGTTTGCAGTCGCATTCCTTTCGCTCTTTTGCACCATCGCGGCATTCTAC ATACAGAATGCTGCGGTCAGGAGAACAACGCCAACGCGTGTTGGATTTCTGATGGGGACTGAGCCCTTTTTTGGCTTCCT CCTCGCACATCTTTTGCTCGCCGAACCGATCAGCGCGACAAGCGTATCGGGTGCTGCCCTCATCCTCGCAGGGTCCTTTG CCGGAATTCTCTCCGAAAACAGGAAAAGATCATGA
Upstream 100 bases:
>100_bases CGCGTTTTCATTCTATCCGATTCATGACCGGCTCTCTTAGCTTGGTTGCGTAAAACCCGCTCATCTTGCGGGAAATGCAG TCAAAAAGGAAATCCCTATC
Downstream 100 bases:
>100_bases ATTTCGTTATTTTCATAATTAGCGCAATGTCGTTCTTGTTTACGGTACGAGAACAGAGAAAAGCTATAGGGCAGCCGCGA CTAACCCTACGCTCATCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS
Sequences:
>Translated_304_residues MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS >Mature_304_residues MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32073; Mature: 32073
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTI CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHH IMMIVARREIVAMSRGDILRGFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHH LDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDLLVLGAAVLRAIMVVSTKRLM HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH FGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSEN HHCCHHCCCCCCHHHHEECCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHCC RKRS CCCC >Mature Secondary Structure MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTI CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHH IMMIVARREIVAMSRGDILRGFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHH LDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDLLVLGAAVLRAIMVVSTKRLM HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH FGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSEN HHCCHHCCCCCCHHHHEECCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHCC RKRS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA