Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102466

Identifier: 222102466

GI number: 222102466

Start: 63440

End: 64354

Strand: Direct

Name: 222102466

Synonym: Avi_7072

Alternate gene names: NA

Gene position: 63440-64354 (Clockwise)

Preceding gene: 222102465

Following gene: 222102467

Centisome position: 10.04

GC content: 52.02

Gene sequence:

>915_bases
GTGGTTGGGTTTAGAAATGCCTCATTATCGAGAAGACCTGTTGCTGTCTCCATGTGGGCAGACTTGGCAGTCCTCGGGGT
CGCTGTCGTGTGGGGGACTAGCTATCCCGTTGCAAAGGGAGCGCTACTATACGCTCCAGTCTTGATCCTTATTCTTTATC
GCTTCCTGATCACGACGATTATCATGATGATCGTAGCGCGTCGCGAGATTGTGGCTATGTCGCGGGGAGATATTCTACGG
GGATTTTTACTTGGGTCGATCCTGTTTTCAATTTTCCTTGCAGAAACCTATGGGGTCGCTTTGACGAGTGCGACGAATAC
GGCGCTAATCATCTCCCTTTGTGTGATCTTTACACCAATTCTGGACTACGGGTTGTCACGGAAACTTCCGCCGCCTGCCG
TTATTGCGAGTGCCATCGTTTGCTGCGTTGGCGTCGGTATCTTGACCGGTGGTATAAACGCCTTCGGTGCAGGTGACTTG
CTCGTTTTGGGTGCAGCAGTATTACGAGCCATTATGGTTGTCTCGACAAAGCGGCTTATGTTCGGTCGCCAGATTTCCTC
TGCGGCACTCACTGCAATCCAGGGTTTTTCGGTCACAACGCTGACCTTGGTTGTCGTGATCGCTCAATTTGGTGTCGGCA
GCATTGCGGTTGATGCCGATCCCCAATTTTGGTTTGCAGTCGCATTCCTTTCGCTCTTTTGCACCATCGCGGCATTCTAC
ATACAGAATGCTGCGGTCAGGAGAACAACGCCAACGCGTGTTGGATTTCTGATGGGGACTGAGCCCTTTTTTGGCTTCCT
CCTCGCACATCTTTTGCTCGCCGAACCGATCAGCGCGACAAGCGTATCGGGTGCTGCCCTCATCCTCGCAGGGTCCTTTG
CCGGAATTCTCTCCGAAAACAGGAAAAGATCATGA

Upstream 100 bases:

>100_bases
CGCGTTTTCATTCTATCCGATTCATGACCGGCTCTCTTAGCTTGGTTGCGTAAAACCCGCTCATCTTGCGGGAAATGCAG
TCAAAAAGGAAATCCCTATC

Downstream 100 bases:

>100_bases
ATTTCGTTATTTTCATAATTAGCGCAATGTCGTTCTTGTTTACGGTACGAGAACAGAGAAAAGCTATAGGGCAGCCGCGA
CTAACCCTACGCTCATCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR
GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL
LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY
IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS

Sequences:

>Translated_304_residues
MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR
GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL
LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY
IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS
>Mature_304_residues
MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTIIMMIVARREIVAMSRGDILR
GFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPILDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDL
LVLGAAVLRAIMVVSTKRLMFGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY
IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSENRKRS

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32073; Mature: 32073

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTI
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
IMMIVARREIVAMSRGDILRGFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHH
LDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDLLVLGAAVLRAIMVVSTKRLM
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSEN
HHCCHHCCCCCCHHHHEECCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHCC
RKRS
CCCC
>Mature Secondary Structure
MVGFRNASLSRRPVAVSMWADLAVLGVAVVWGTSYPVAKGALLYAPVLILILYRFLITTI
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
IMMIVARREIVAMSRGDILRGFLLGSILFSIFLAETYGVALTSATNTALIISLCVIFTPI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHH
LDYGLSRKLPPPAVIASAIVCCVGVGILTGGINAFGAGDLLVLGAAVLRAIMVVSTKRLM
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FGRQISSAALTAIQGFSVTTLTLVVVIAQFGVGSIAVDADPQFWFAVAFLSLFCTIAAFY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
IQNAAVRRTTPTRVGFLMGTEPFFGFLLAHLLLAEPISATSVSGAALILAGSFAGILSEN
HHCCHHCCCCCCHHHHEECCCHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHCC
RKRS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA