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The map label for this gene is ybfI [H]

Identifier: 222102465

GI number: 222102465

Start: 62486

End: 63337

Strand: Direct

Name: ybfI [H]

Synonym: Avi_7070

Alternate gene names: 222102465

Gene position: 62486-63337 (Clockwise)

Preceding gene: 222102464

Following gene: 222102466

Centisome position: 9.89

GC content: 50.0

Gene sequence:

>852_bases
TTGAACGCACAGGAAGAAAGATCACGTGACTGGGTATCGATCCGTCGCCCGTTCGCAAAGGCTGGTCTGGAAACGATGAC
GGCGCGATATATCCAGCAATCCTTTAAACCGCATGCACATGATGAATATGTCATAGGGATCATTGAGGGAGGTGTTCATT
CTGTTTGGTGTCGTGGCATTCATCATAACATGCCGTCAGGCACTGTGGTCACCATGCATCCAGGTGATGTCCACTATGGC
AATGCGGCAATTGCCGAGGGCTGGAAGCAGCGGATGATTTACATCAGTGAAAATGAAATTGGAAAATTCATTAGCGACAT
TGCAGGTGGAGACAAGTTTTTGCTACCTGATTTCAAACAAACGTTTCATGATCGGCCGGATCTCGCCCATTCCTTCGCGC
AGTTTCATGAAGTCTTGCATAGCTCACCCTTGGCATTGGCACGTGATGTTGCGCTTGATTCGATTATGCGCGTCACAATT
GGTGCCTTGTCGCCAGATTTCGTGAAGGCAAAAGACGCAAAGCAGCCGTCCGGTCGCATTGCAGATGCCGTTGAGTTCTT
GCACAATCGCATCGAAGATGATGTCACGCTGGACGAACTTTGTGATGTCGCTGGTTTGAGGCGGCGGCAAACCATTGAAG
CATTCAAGCGGTGTACCGGATTACCCCCGCACGCTTATCACGTTATTCAAAAAGTGAAGGCCGTCAAAACTATGCTACGT
GATGGTTTTTCGGCAACCGAGGCGGCCGCACGAGCTGGATTTGCTGACCAAAGCCACATGACGCGCCACTTCGTTGGGGT
GGTCGGAATGACACCTGGTGCCTACGCTCTGGATTGCCAAAAAAAATATTAA

Upstream 100 bases:

>100_bases
CGTTTTAGTGTTTTTCTTCTATCGTGAATAAAGGGGTGTCAGAAACAGATCGCCCGAGGCTGGCGTGTGGCTATTGGCCG
AAACGATTGGGGAGCGAAGA

Downstream 100 bases:

>100_bases
CCCGCGTTTTCATTCTATCCGATTCATGACCGGCTCTCTTAGCTTGGTTGCGTAAAACCCGCTCATCTTGCGGGAAATGC
AGTCAAAAAGGAAATCCCTA

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNAQEERSRDWVSIRRPFAKAGLETMTARYIQQSFKPHAHDEYVIGIIEGGVHSVWCRGIHHNMPSGTVVTMHPGDVHYG
NAAIAEGWKQRMIYISENEIGKFISDIAGGDKFLLPDFKQTFHDRPDLAHSFAQFHEVLHSSPLALARDVALDSIMRVTI
GALSPDFVKAKDAKQPSGRIADAVEFLHNRIEDDVTLDELCDVAGLRRRQTIEAFKRCTGLPPHAYHVIQKVKAVKTMLR
DGFSATEAAARAGFADQSHMTRHFVGVVGMTPGAYALDCQKKY

Sequences:

>Translated_283_residues
MNAQEERSRDWVSIRRPFAKAGLETMTARYIQQSFKPHAHDEYVIGIIEGGVHSVWCRGIHHNMPSGTVVTMHPGDVHYG
NAAIAEGWKQRMIYISENEIGKFISDIAGGDKFLLPDFKQTFHDRPDLAHSFAQFHEVLHSSPLALARDVALDSIMRVTI
GALSPDFVKAKDAKQPSGRIADAVEFLHNRIEDDVTLDELCDVAGLRRRQTIEAFKRCTGLPPHAYHVIQKVKAVKTMLR
DGFSATEAAARAGFADQSHMTRHFVGVVGMTPGAYALDCQKKY
>Mature_283_residues
MNAQEERSRDWVSIRRPFAKAGLETMTARYIQQSFKPHAHDEYVIGIIEGGVHSVWCRGIHHNMPSGTVVTMHPGDVHYG
NAAIAEGWKQRMIYISENEIGKFISDIAGGDKFLLPDFKQTFHDRPDLAHSFAQFHEVLHSSPLALARDVALDSIMRVTI
GALSPDFVKAKDAKQPSGRIADAVEFLHNRIEDDVTLDELCDVAGLRRRQTIEAFKRCTGLPPHAYHVIQKVKAVKTMLR
DGFSATEAAARAGFADQSHMTRHFVGVVGMTPGAYALDCQKKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31564; Mature: 31564

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00142 ZINC_PROTEASE ; PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQEERSRDWVSIRRPFAKAGLETMTARYIQQSFKPHAHDEYVIGIIEGGVHSVWCRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHH
HHNMPSGTVVTMHPGDVHYGNAAIAEGWKQRMIYISENEIGKFISDIAGGDKFLLPDFKQ
HCCCCCCCEEEECCCCCCCCCHHHHHHHHHCEEEECCHHHHHHHHHHCCCCCEECCHHHH
TFHDRPDLAHSFAQFHEVLHSSPLALARDVALDSIMRVTIGALSPDFVKAKDAKQPSGRI
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH
ADAVEFLHNRIEDDVTLDELCDVAGLRRRQTIEAFKRCTGLPPHAYHVIQKVKAVKTMLR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
DGFSATEAAARAGFADQSHMTRHFVGVVGMTPGAYALDCQKKY
CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure
MNAQEERSRDWVSIRRPFAKAGLETMTARYIQQSFKPHAHDEYVIGIIEGGVHSVWCRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHH
HHNMPSGTVVTMHPGDVHYGNAAIAEGWKQRMIYISENEIGKFISDIAGGDKFLLPDFKQ
HCCCCCCCEEEECCCCCCCCCHHHHHHHHHCEEEECCHHHHHHHHHHCCCCCEECCHHHH
TFHDRPDLAHSFAQFHEVLHSSPLALARDVALDSIMRVTIGALSPDFVKAKDAKQPSGRI
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH
ADAVEFLHNRIEDDVTLDELCDVAGLRRRQTIEAFKRCTGLPPHAYHVIQKVKAVKTMLR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
DGFSATEAAARAGFADQSHMTRHFVGVVGMTPGAYALDCQKKY
CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]