| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102454
Identifier: 222102454
GI number: 222102454
Start: 48553
End: 49623
Strand: Reverse
Name: 222102454
Synonym: Avi_7055
Alternate gene names: NA
Gene position: 49623-48553 (Counterclockwise)
Preceding gene: 222102455
Following gene: 222102453
Centisome position: 7.85
GC content: 59.2
Gene sequence:
>1071_bases ATGCTGGGAAAAAATCTCACGCGTCTTGCTGCCATCGGTTTCGAGCAAGCCCATCGCGATGGCGAGGATATGGGCGTGAT CGCGGTGCGAGGACGGTATCAGGTCAACGCGGACGGCTCTCTTCAGCTCAGTGACCGGCAGGATATCGTGCTGGTGGATG AGTATGACGGCAATCCCCATACCTCGCCTCTGATCAAAGCTGCTGATCTCATTCCATTCAAACCGGCAAGTGACATCACG TTTCTCGGTGCAGCCTATGCGCCGGACGGGCGCGCCAAACAGGACTGGCTCGTTGCCATCAAGGTTGGACAGCTTTCTCA TGCCATTCGGGTGACAGGAGCACGGTCCTGGGTCTGCACCGCAGGCAAATGGCGCTTGTCAGATCCACAGGAGGCGACCG AGGTTCCGATTGATTATCGATTGGCAGCCGGCGATGGCCACATCGAAGGACTGGGCTCGCCCAGCGTTCCCGGCAATCCG ATAGGCGTATCGAGGCCGACGCCCGAACAGGCGTTGTCATCCGCATCAGTGCCAGCACCACGCATCGATGACGCCGAAGA AGACTATTCAGATCCGTTTTTTGCACGCAAGCCCCTAGGCTTCGGACCGGTGGCACCATTCTGGTATTTTCGCCAGAGAT ATGCCGGAACCTATGACGACACGTGGCAGGCGCATCGACATCCGCAGCTTCCTACGGATTTTGACTATCGGTTTTATCAC TCGGCCCATCCGTCGATGATCTATCCAGGTTTTCTGGCGGGCGACGAGATGGTGGAGATGGCGAGACTGACGCCTGGCGG CGGGACGTTCAAGTTCGCGCTCCCTGCGCTGCGCCCTGTTGCAAGCTATCGGTGGCGCGATGGCCGCGAGGTTGTGGTGC AGCTCAACCTCGACGGCGTGCATATCGACTTTCGCAATGGCGCCCGGAACGTCGATTTGACCTGGCGCGCCTGGCTGCCG ATCTGCCCGAATTTTCTATGTATCAACCTGTCAGACAGGCCGTTTGCGGATCAGGAAGCGGCCAGCCTGCCACGCGCCAG CCTGCATGGACTGACGGAGGTGCTGGCATGA
Upstream 100 bases:
>100_bases GCTGGCAATGTGACGATCGTCGGCACGAAGTTCAATTTCGCCGCATCGGGACATGTCCAGATCAATGGCGAAGTCATCGA TCTGAACTGAGGGCGCGTGC
Downstream 100 bases:
>100_bases GCTATCCATCGCAAGAGGCAAGCCGCGAGACGCGATTGGGTCTGATCATCTCGAAATATCCTGATGTTTGCCGCTCGCCG CATGCCTGCGTGCCATACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MLGKNLTRLAAIGFEQAHRDGEDMGVIAVRGRYQVNADGSLQLSDRQDIVLVDEYDGNPHTSPLIKAADLIPFKPASDIT FLGAAYAPDGRAKQDWLVAIKVGQLSHAIRVTGARSWVCTAGKWRLSDPQEATEVPIDYRLAAGDGHIEGLGSPSVPGNP IGVSRPTPEQALSSASVPAPRIDDAEEDYSDPFFARKPLGFGPVAPFWYFRQRYAGTYDDTWQAHRHPQLPTDFDYRFYH SAHPSMIYPGFLAGDEMVEMARLTPGGGTFKFALPALRPVASYRWRDGREVVVQLNLDGVHIDFRNGARNVDLTWRAWLP ICPNFLCINLSDRPFADQEAASLPRASLHGLTEVLA
Sequences:
>Translated_356_residues MLGKNLTRLAAIGFEQAHRDGEDMGVIAVRGRYQVNADGSLQLSDRQDIVLVDEYDGNPHTSPLIKAADLIPFKPASDIT FLGAAYAPDGRAKQDWLVAIKVGQLSHAIRVTGARSWVCTAGKWRLSDPQEATEVPIDYRLAAGDGHIEGLGSPSVPGNP IGVSRPTPEQALSSASVPAPRIDDAEEDYSDPFFARKPLGFGPVAPFWYFRQRYAGTYDDTWQAHRHPQLPTDFDYRFYH SAHPSMIYPGFLAGDEMVEMARLTPGGGTFKFALPALRPVASYRWRDGREVVVQLNLDGVHIDFRNGARNVDLTWRAWLP ICPNFLCINLSDRPFADQEAASLPRASLHGLTEVLA >Mature_356_residues MLGKNLTRLAAIGFEQAHRDGEDMGVIAVRGRYQVNADGSLQLSDRQDIVLVDEYDGNPHTSPLIKAADLIPFKPASDIT FLGAAYAPDGRAKQDWLVAIKVGQLSHAIRVTGARSWVCTAGKWRLSDPQEATEVPIDYRLAAGDGHIEGLGSPSVPGNP IGVSRPTPEQALSSASVPAPRIDDAEEDYSDPFFARKPLGFGPVAPFWYFRQRYAGTYDDTWQAHRHPQLPTDFDYRFYH SAHPSMIYPGFLAGDEMVEMARLTPGGGTFKFALPALRPVASYRWRDGREVVVQLNLDGVHIDFRNGARNVDLTWRAWLP ICPNFLCINLSDRPFADQEAASLPRASLHGLTEVLA
Specific function: Unknown
COG id: COG5351
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39266; Mature: 39266
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKNLTRLAAIGFEQAHRDGEDMGVIAVRGRYQVNADGSLQLSDRQDIVLVDEYDGNPH CCCCCCHHHHHHCHHHHHCCCCCEEEEEEECEEEECCCCCEEECCCCCEEEEECCCCCCC TSPLIKAADLIPFKPASDITFLGAAYAPDGRAKQDWLVAIKVGQLSHAIRVTGARSWVCT CCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE AGKWRLSDPQEATEVPIDYRLAAGDGHIEGLGSPSVPGNPIGVSRPTPEQALSSASVPAP CCCEECCCCHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC RIDDAEEDYSDPFFARKPLGFGPVAPFWYFRQRYAGTYDDTWQAHRHPQLPTDFDYRFYH CCCCCHHHCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEE SAHPSMIYPGFLAGDEMVEMARLTPGGGTFKFALPALRPVASYRWRDGREVVVQLNLDGV CCCCCEECCCEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCEEEEEEECCEE HIDFRNGARNVDLTWRAWLPICPNFLCINLSDRPFADQEAASLPRASLHGLTEVLA EEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHC >Mature Secondary Structure MLGKNLTRLAAIGFEQAHRDGEDMGVIAVRGRYQVNADGSLQLSDRQDIVLVDEYDGNPH CCCCCCHHHHHHCHHHHHCCCCCEEEEEEECEEEECCCCCEEECCCCCEEEEECCCCCCC TSPLIKAADLIPFKPASDITFLGAAYAPDGRAKQDWLVAIKVGQLSHAIRVTGARSWVCT CCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE AGKWRLSDPQEATEVPIDYRLAAGDGHIEGLGSPSVPGNPIGVSRPTPEQALSSASVPAP CCCEECCCCHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC RIDDAEEDYSDPFFARKPLGFGPVAPFWYFRQRYAGTYDDTWQAHRHPQLPTDFDYRFYH CCCCCHHHCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEE SAHPSMIYPGFLAGDEMVEMARLTPGGGTFKFALPALRPVASYRWRDGREVVVQLNLDGV CCCCCEECCCEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCEEEEEEECCEE HIDFRNGARNVDLTWRAWLPICPNFLCINLSDRPFADQEAASLPRASLHGLTEVLA EEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA