The gene/protein map for NC_011981 is currently unavailable.
Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is yusZ [H]

Identifier: 222102440

GI number: 222102440

Start: 37605

End: 38432

Strand: Reverse

Name: yusZ [H]

Synonym: Avi_7039

Alternate gene names: 222102440

Gene position: 38432-37605 (Counterclockwise)

Preceding gene: 222102442

Following gene: 222102436

Centisome position: 6.08

GC content: 58.33

Gene sequence:

>828_bases
ATGTCGAGAAAGACCTTTTTCATCACCGGCGCAAATTCCGGTTTCGGCCTGGCCATCGCTACAGCTGCTGCCCAGATGGG
CCATCAGGTGATCGGCACCGTCCGATCCGAGATAGCACGCTCGGCGCTTGCCGCAGCCGTACCCGCCATTCACCCCGTCC
TTTGCGACGTCACCGCCTTCGACCAGATTCCGGATGTCGTCCGTGATACGGAAGACAAGCACGGGCCGGTCGATGTGCTC
ATCAACAATGCCGGTTACGGCCACGAGGGCGTCATCGAAGAATCGCCTCTCGAACAGATGCGCAGACAGTTCGACGTGAA
CGTCTTTGGCGCTGTAGCTGTCGCCAAGGCGTTTATTCCCAGGTTCCGCGAACGCCGCCAGGGTTTCATCGTCAATGTCA
CGTCGATGGGCGGCATGATCACCATGCCCGGTATCGGGTATTACTGTGGCAGCAAGTTTGCGCTGCAAGGCATATCAGAA
GTGATGCGTTCAGAAATGGCGCCGTTCGGCGTGCATATGACGACGTTATGCCCCGGCTCTTTCCGCACAGACTGGGCCGG
ACGTTCGATGATCCGCACGGAACGGTCGATCGCGGATTACGATTCCCTTTTTGATCCGATACGCGAGGCCCGGCAGGCAG
TCAGTGGCAAGCAGCTTGGTGATCCAGAGAAACTCGCTGCAGCCGTCTTGATCCTAGTCGAGACCGATAACCCGCCACCG
CAGCTTCTTCTTGGCAGCGACGCTCTCAAGCATGTATCGGCGAGACTCAAGCGTCTTCAAGAAGAAATCGATGCGTGGAC
GTCCGTGACGGTATCGACGGACGGCTGA

Upstream 100 bases:

>100_bases
TCATAGGATTTGGCAACAACTTCATCGGATCTGCAATCGTTCAGCCGGACGATTAATACTATCGGTCAAACGTCTCTGCA
ATCAAGGAAGTTCGCACATC

Downstream 100 bases:

>100_bases
CCGGAGAAAGAGGGCGCTCGGACCCTACGGCGCATTTACCCATTTATGATTTTCCTAAATGAGGCCTCAGGCGGGGCCGA
AGCCCCGCGATCGTCCTATT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVL
INNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISE
VMRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP
QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG

Sequences:

>Translated_275_residues
MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVL
INNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISE
VMRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP
QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG
>Mature_274_residues
SRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVLI
NNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEV
MRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPPQ
LLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=250, Percent_Identity=28.8, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI40548397, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI214010158, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI214010156, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI22758144, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4503817, Length=221, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI223718074, Length=254, Percent_Identity=28.3464566929134, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=27.807486631016, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=30.1587301587302, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI22507405, Length=197, Percent_Identity=31.4720812182741, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI44680136, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI44680133, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI17738292, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=25.7936507936508, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI150247226, Length=237, Percent_Identity=29.535864978903, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=31.7460317460317, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI40807363, Length=184, Percent_Identity=29.8913043478261, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI157739938, Length=131, Percent_Identity=33.587786259542, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=26.5560165975104, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504503, Length=208, Percent_Identity=31.25, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=30.9782608695652, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI50726952, Length=183, Percent_Identity=32.2404371584699, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=216, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=27.3224043715847, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI210032110, Length=131, Percent_Identity=29.7709923664122, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI31542939, Length=241, Percent_Identity=25.7261410788382, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI210032112, Length=115, Percent_Identity=31.304347826087, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI25282469, Length=138, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=229, Percent_Identity=29.6943231441048, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=30.3191489361702, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=29.1208791208791, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787820, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=186, Percent_Identity=31.7204301075269, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=245, Percent_Identity=28.9795918367347, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=218, Percent_Identity=28.8990825688073, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=200, Percent_Identity=29, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=198, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=28.8065843621399, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=26.5560165975104, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=224, Percent_Identity=29.4642857142857, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=235, Percent_Identity=25.9574468085106, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=247, Percent_Identity=25.9109311740891, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193210355, Length=228, Percent_Identity=24.5614035087719, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=245, Percent_Identity=26.9387755102041, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=184, Percent_Identity=27.1739130434783, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32563807, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=24.1803278688525, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=245, Percent_Identity=25.3061224489796, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=27.0935960591133, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6320089, Length=189, Percent_Identity=27.5132275132275, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=271, Percent_Identity=26.1992619926199, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=30.9644670050761, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=32.6315789473684, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI281364892, Length=227, Percent_Identity=25.5506607929515, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24651139, Length=197, Percent_Identity=30.9644670050761, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=28.448275862069, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=239, Percent_Identity=28.4518828451883, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=28.1632653061224, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24640492, Length=183, Percent_Identity=25.6830601092896, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281364494, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221510726, Length=117, Percent_Identity=34.1880341880342, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=238, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24649181, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663911, Length=191, Percent_Identity=30.3664921465969, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=25.1461988304094, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24641232, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648693, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648944, Length=192, Percent_Identity=25.5208333333333, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=27.3743016759777, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581726, Length=131, Percent_Identity=28.2442748091603, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29765; Mature: 29634

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAF
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQIPDVVRDTEDKHGPVDVLINNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIP
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
RFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEVMRSEMAPFGVHMTTLCPGS
HHHHHCCCEEEEEECCCCEEECCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
FRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCCCC
QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG
CEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure 
SRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAF
CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQIPDVVRDTEDKHGPVDVLINNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIP
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
RFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEVMRSEMAPFGVHMTTLCPGS
HHHHHCCCEEEEEECCCCEEECCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
FRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCCCC
QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG
CEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]