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The map label for this gene is repB [H]

Identifier: 222102414

GI number: 222102414

Start: 1293

End: 2306

Strand: Direct

Name: repB [H]

Synonym: Avi_7001

Alternate gene names: 222102414

Gene position: 1293-2306 (Clockwise)

Preceding gene: 222102413

Following gene: 222102415

Centisome position: 0.2

GC content: 55.13

Gene sequence:

>1014_bases
ATGAGCCGGAAGCACATCCTTGGCGTCTCGACGGATGCCCAAGACGCAAAGCCCTCTGACAACCGGGCAGGTAAAACGCG
GTCAATGCCTCTTCTTGGGGTCGCCAGAAAGGAACGCGACCCGGCAACAAAGCTGACTGCGAATATCGGAAACGCACTGC
GTGAGCAGAATGACCGGTTGAGTCGCGCTGAAGAGATAGAGCGGCGTCTTGCTGAAGGCCACGCGGTTATCGAATTGGAT
GTCTCGACGGTAGATCCATCCTTCGTGCAGGACCGAATGCCTGGCGACATCGACGGACTTCTCGAATCGATTCGAGAGCA
GGGCCAGCAGGTGCCAATCCTCGTGCGCCCTCACCCGGATCAGCCGGGCCGATATCAGGTGGGCTTCGGTCACCGTCGGC
TTCAGGCCGTTTCAGAATTAGGTCTTCCGGTCAAAGCGGTTGTTCGCGATTTGACGGATGAACAATTGGTCATTGCACAG
GGCCAGGAGAATAATGAACGCCAGGATCTCACCTTTATTGAGAAAGCACGTTTTGCACATCGCCTGAATAAGCAATTTTC
ACGCGAAATCGTTATTGCCGCGATGTCGATCGACAAGAGTAACCTGTCGAAGATGCTTTTGCTGGTCGACACCCTCCCCC
CGGAGCTGATCGATGCAATCGGCCCCGCACCAGGTGTCGGCCGACCAAGCTGGCAGCAACTAACGGAACTTATCGAAAAG
GCCCCCTCGCCTTCTGACGTATCGAAATACGCGCTATCGAATGAAGTGCAAGCGCTGCCATCTGCGGAGCGGTTCAAGGC
TGTGTTGGTCAGCCTTAAGCCTCCGCGGGTCTCTCGCGGACTTCCGGAGATTATGTCGACCCCTGATGGGGATCGATTGG
CTCAGGTTTCGCAAAGCAAATCCAAATTGGAAATCACGATAGACAGAAAGGCGACGCCTGATTTCGCCGCCTTCGTCATT
GATCACTTGCCTGCGCTTTATCAGGCGCACCGAGCACAAAACCAGAAGAAATAA

Upstream 100 bases:

>100_bases
GTCAGTTTACCCGATCAACCTATGATCGCGCCTTGGAGGCTATGAACGCTGTCAATGATGAGATTGAATCTCTTATCAAA
AAAGCATGGGGTAGAACCAC

Downstream 100 bases:

>100_bases
GGAGAGTAGTCAGCAAAAGAAAAGAGCTCCCCCAACGTCGCCGTCGTGGAAGCCCTTCTGTCTCTCTAGCAAGAACAGAA
TCGCATTTCCTCGAATCCTC

Product: replication protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSRKHILGVSTDAQDAKPSDNRAGKTRSMPLLGVARKERDPATKLTANIGNALREQNDRLSRAEEIERRLAEGHAVIELD
VSTVDPSFVQDRMPGDIDGLLESIREQGQQVPILVRPHPDQPGRYQVGFGHRRLQAVSELGLPVKAVVRDLTDEQLVIAQ
GQENNERQDLTFIEKARFAHRLNKQFSREIVIAAMSIDKSNLSKMLLLVDTLPPELIDAIGPAPGVGRPSWQQLTELIEK
APSPSDVSKYALSNEVQALPSAERFKAVLVSLKPPRVSRGLPEIMSTPDGDRLAQVSQSKSKLEITIDRKATPDFAAFVI
DHLPALYQAHRAQNQKK

Sequences:

>Translated_337_residues
MSRKHILGVSTDAQDAKPSDNRAGKTRSMPLLGVARKERDPATKLTANIGNALREQNDRLSRAEEIERRLAEGHAVIELD
VSTVDPSFVQDRMPGDIDGLLESIREQGQQVPILVRPHPDQPGRYQVGFGHRRLQAVSELGLPVKAVVRDLTDEQLVIAQ
GQENNERQDLTFIEKARFAHRLNKQFSREIVIAAMSIDKSNLSKMLLLVDTLPPELIDAIGPAPGVGRPSWQQLTELIEK
APSPSDVSKYALSNEVQALPSAERFKAVLVSLKPPRVSRGLPEIMSTPDGDRLAQVSQSKSKLEITIDRKATPDFAAFVI
DHLPALYQAHRAQNQKK
>Mature_336_residues
SRKHILGVSTDAQDAKPSDNRAGKTRSMPLLGVARKERDPATKLTANIGNALREQNDRLSRAEEIERRLAEGHAVIELDV
STVDPSFVQDRMPGDIDGLLESIREQGQQVPILVRPHPDQPGRYQVGFGHRRLQAVSELGLPVKAVVRDLTDEQLVIAQG
QENNERQDLTFIEKARFAHRLNKQFSREIVIAAMSIDKSNLSKMLLLVDTLPPELIDAIGPAPGVGRPSWQQLTELIEKA
PSPSDVSKYALSNEVQALPSAERFKAVLVSLKPPRVSRGLPEIMSTPDGDRLAQVSQSKSKLEITIDRKATPDFAAFVID
HLPALYQAHRAQNQKK

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR017819
- InterPro:   IPR011111 [H]

Pfam domain/function: PF02195 ParBc; PF07506 RepB [H]

EC number: NA

Molecular weight: Translated: 37316; Mature: 37185

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKHILGVSTDAQDAKPSDNRAGKTRSMPLLGVARKERDPATKLTANIGNALREQNDRL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SRAEEIERRLAEGHAVIELDVSTVDPSFVQDRMPGDIDGLLESIREQGQQVPILVRPHPD
HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCC
QPGRYQVGFGHRRLQAVSELGLPVKAVVRDLTDEQLVIAQGQENNERQDLTFIEKARFAH
CCCCEEECCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
RLNKQFSREIVIAAMSIDKSNLSKMLLLVDTLPPELIDAIGPAPGVGRPSWQQLTELIEK
HHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHC
APSPSDVSKYALSNEVQALPSAERFKAVLVSLKPPRVSRGLPEIMSTPDGDRLAQVSQSK
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCHHHHCCCCCHHHHHHHCCC
SKLEITIDRKATPDFAAFVIDHLPALYQAHRAQNQKK
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRKHILGVSTDAQDAKPSDNRAGKTRSMPLLGVARKERDPATKLTANIGNALREQNDRL
CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SRAEEIERRLAEGHAVIELDVSTVDPSFVQDRMPGDIDGLLESIREQGQQVPILVRPHPD
HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCC
QPGRYQVGFGHRRLQAVSELGLPVKAVVRDLTDEQLVIAQGQENNERQDLTFIEKARFAH
CCCCEEECCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
RLNKQFSREIVIAAMSIDKSNLSKMLLLVDTLPPELIDAIGPAPGVGRPSWQQLTELIEK
HHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHC
APSPSDVSKYALSNEVQALPSAERFKAVLVSLKPPRVSRGLPEIMSTPDGDRLAQVSQSK
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCHHHHCCCCCHHHHHHHCCC
SKLEITIDRKATPDFAAFVIDHLPALYQAHRAQNQKK
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA