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The map label for this gene is repA [H]

Identifier: 222102413

GI number: 222102413

Start: 70

End: 1296

Strand: Direct

Name: repA [H]

Synonym: Avi_7000

Alternate gene names: 222102413

Gene position: 70-1296 (Clockwise)

Preceding gene: NA

Following gene: 222102414

Centisome position: 0.01

GC content: 50.2

Gene sequence:

>1227_bases
ATGGGTTTTGACATGGCGAAAATCGCCCCGAAAACTGATGCCGTGATTGAGGGGTTGACTGCCTTGATGGAGCGTCACGC
TGACGCGCTTTCCAGCCAGTTGCAAGCACATCATTTGAAAGTTTTCCCGCCGACCTCCGAAAAGGGGATTAGGTCCTTCG
GCCCGTCTGAAGCGTCCAAGTTGCTTGGCGTTGGGGAGTCTTATCTACGACAGATTGCTTCGGAAATGCCAGAGTTGAAT
GTCAGCATGAGCCCTGGGGGCCGGCGCATTTTCTCGATTGAAGATATACACGTGATCCGCAAACATATGGACCAGATTGG
TCGTGGAAACCGTCGCTATCTTCCGCATCGTCGAGACGGGGAGCAGCTTCAAGTCATTTCTGTTATGAATTTCAAAGGTG
GCTCGGGCAAAACGACGACCGCTGCGCATTTGGCTCAATATCTCGCAATGCGTGGTTACCGAGTGCTTGCTATCGATCTC
GATCCTCAGGCAAGCCTGTCTGCGCTCTTTGGCAGCCAACCGGAGACGGATGTCGGTCCAAACGAGACTCTCTATGGCGC
CATCAGATATGATGATGAGCAAGTGCCGATCGAACAGGTCGTTCGGGGAACATATATTCCGGATCTTCATCTCATTCCCG
GCAATCTCGAACTTATGGAATTTGAGCATGACACTCCCCGCGCCTTAATGAAGCGCAAGGAAGGCGATACGCTCTTCTAT
GGCCGCATCAGTCAAGCGATTGAAGACATTGCAGATAATTATGATGTCGTCGTCATCGATTGCCCTCCGCAACTTGGTTA
CCTCACGCTTTCAGCATTGACGGCTGCAACATCTATCCTTGTTACGGTTCATCCCCAGATGCTCGATGTGATGTCAATGA
ACCAGTTTCTGGCAATGACCTCGAACTTGTTGAGGGAAATTGAGAGCGCCGGCGCTGAGTTCAAGTTCAATTGGATGCGT
TATCTTATCACTCGTTTCGAGCCGAGTGATGGACCACAAAATCAAATGGTTGGCTATCTCAGGTCTATTTTCGGTGAGAA
CGTCCTCAATTTTCCAATGCTCAAAACGACGGCTGTCTCAGACGCGGGCCTGACAAACCAAACCCTTTTTGAAGTGGAAC
GCGGTCAGTTTACCCGATCAACCTATGATCGCGCCTTGGAGGCTATGAACGCTGTCAATGATGAGATTGAATCTCTTATC
AAAAAAGCATGGGGTAGAACCACATGA

Upstream 100 bases:

>100_bases
TTTACCAACCTTAAACTCCTTGCTCGAAAATCCGAATCGGCGCTAATAATCAATGGCGAAATTTTACTGGTTTCGCGGAA
TTTAGCGCCGATAGCAAAAA

Downstream 100 bases:

>100_bases
GCCGGAAGCACATCCTTGGCGTCTCGACGGATGCCCAAGACGCAAAGCCCTCTGACAACCGGGCAGGTAAAACGCGGTCA
ATGCCTCTTCTTGGGGTCGC

Product: replication protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MGFDMAKIAPKTDAVIEGLTALMERHADALSSQLQAHHLKVFPPTSEKGIRSFGPSEASKLLGVGESYLRQIASEMPELN
VSMSPGGRRIFSIEDIHVIRKHMDQIGRGNRRYLPHRRDGEQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDL
DPQASLSALFGSQPETDVGPNETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMKRKEGDTLFY
GRISQAIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAMTSNLLREIESAGAEFKFNWMR
YLITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAVSDAGLTNQTLFEVERGQFTRSTYDRALEAMNAVNDEIESLI
KKAWGRTT

Sequences:

>Translated_408_residues
MGFDMAKIAPKTDAVIEGLTALMERHADALSSQLQAHHLKVFPPTSEKGIRSFGPSEASKLLGVGESYLRQIASEMPELN
VSMSPGGRRIFSIEDIHVIRKHMDQIGRGNRRYLPHRRDGEQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDL
DPQASLSALFGSQPETDVGPNETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMKRKEGDTLFY
GRISQAIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAMTSNLLREIESAGAEFKFNWMR
YLITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAVSDAGLTNQTLFEVERGQFTRSTYDRALEAMNAVNDEIESLI
KKAWGRTT
>Mature_407_residues
GFDMAKIAPKTDAVIEGLTALMERHADALSSQLQAHHLKVFPPTSEKGIRSFGPSEASKLLGVGESYLRQIASEMPELNV
SMSPGGRRIFSIEDIHVIRKHMDQIGRGNRRYLPHRRDGEQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDLD
PQASLSALFGSQPETDVGPNETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMKRKEGDTLFYG
RISQAIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAMTSNLLREIESAGAEFKFNWMRY
LITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAVSDAGLTNQTLFEVERGQFTRSTYDRALEAMNAVNDEIESLIK
KAWGRTT

Specific function: This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number [H]

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR017818 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: NA

Molecular weight: Translated: 45523; Mature: 45391

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDMAKIAPKTDAVIEGLTALMERHADALSSQLQAHHLKVFPPTSEKGIRSFGPSEASK
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCHHHHHH
LLGVGESYLRQIASEMPELNVSMSPGGRRIFSIEDIHVIRKHMDQIGRGNRRYLPHRRDG
HHCCCHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDLDPQASLSALFGSQPETDVGP
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCC
NETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMKRKEGDTLFY
CCCEEEEEEECCCCCCHHHHHCCCCCCCEEECCCCEEEEEECCCCHHHHHHCCCCCEEEH
GRISQAIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAMT
HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHH
SNLLREIESAGAEFKFNWMRYLITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAVS
HHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCC
DAGLTNQTLFEVERGQFTRSTYDRALEAMNAVNDEIESLIKKAWGRTT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GFDMAKIAPKTDAVIEGLTALMERHADALSSQLQAHHLKVFPPTSEKGIRSFGPSEASK
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCHHHHHH
LLGVGESYLRQIASEMPELNVSMSPGGRRIFSIEDIHVIRKHMDQIGRGNRRYLPHRRDG
HHCCCHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDLDPQASLSALFGSQPETDVGP
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCC
NETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMKRKEGDTLFY
CCCEEEEEEECCCCCCHHHHHCCCCCCCEEECCCCEEEEEECCCCHHHHHHCCCCCEEEH
GRISQAIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAMT
HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHH
SNLLREIESAGAEFKFNWMRYLITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAVS
HHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCC
DAGLTNQTLFEVERGQFTRSTYDRALEAMNAVNDEIESLIKKAWGRTT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA