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The map label for this gene is ytbD [H]

Identifier: 222096857

GI number: 222096857

Start: 3149742

End: 3150956

Strand: Reverse

Name: ytbD [H]

Synonym: BCQ_3197

Alternate gene names: 222096857

Gene position: 3150956-3149742 (Counterclockwise)

Preceding gene: 222096858

Following gene: 222096856

Centisome position: 60.43

GC content: 36.95

Gene sequence:

>1215_bases
TTGAATTCATATACAGCATCGTCTTCAGAAGTTAAGACAAGTCGGAGAAGTATATTTGCGTTATTAGCGCTAGCAATTAG
TGCGTTCGGGATTGGGACAACTGAATTTGTTAGTGTCGGTTTATTACCATCTATTTCGGAAGATTTACATGTGTCGGTGA
CAACAGCTGGTTTAACAGTTTCTTTATATGCGTTAGGCGTAGCATTTGGTGCTCCGGTATTAACGTCGTTAACAGCTAAT
ATGTCACGAAAAACGTTATTAATGTGGATTATGATTATTTTCATTATTGGTAATGGAATTGCAGCTGTCGCAACAAGTTT
CACTGTATTACTTATTGCGCGAATTGTTTCTGCACTTTCGCATGGTGTGTTTATGTCAATTGGTTCAACGATTGCTGCGG
CACTTGTACCAGAAAATAAACGTGCTAGCGCCATTGCCATTATGTTTACTGGTGTAACAGTTGCAACTATTACAGGAGCA
CCAATTGGAACATTTATTGGTCAACAATTTGGCTGGAGAACATCATTTTTAGCAATTGTAGTAATTGGAATTATTGCCTT
AATCGCAAATAGTATTCTCATTCCATCTAATATGAAAAAAGGTGCGTCTGTATCATTCCGCGATCAGTTTAAATTAATTA
CAAACGGAAGACTGTTACTAGTTTTCATCATTACTGCATTAGGATATGGGGGAACATTCGTAACATTTACGTATTTATCT
CCGTTATTACAAGAAGTAACAGGATTTAAAGCTAATACGGTTACTATCATTTTATTAGTGTATGGAATCGCCATTGCAAT
AGGGAATGTGATTGGCGGGAAATTATCGAATCATAATCCGATTCGAGCGCTATTTTACATGTTCTTTATTCAAGCGATTA
TATTATTTGTTTTAACATTTACAGCACCATTTAAGGTAGCGGGGTTAATCACAATTATTTTTATGGGACTATTCGCATTT
ATGAATGTTCCAGGGTTACAAGTATATGTCGTAATGTTAGCTGAACGATTTGTACCGAGTGCTGTCGATGTTGCATCGGC
AATTAATATTGCGGCGTTTAACGCCGGGATTGCTCTTGGTGCTTATTTAGGTGGTATTGTAACGAATTCGTTAGGGTTAA
TTCATACTGCTTGGGTAGGCGGCATTATGGTAGTAGGTGCTGTTATTTTAACAGCATGGAGCATGTCATTAGAAAAACGA
GATCAAGTAAAATAA

Upstream 100 bases:

>100_bases
ATAATAGCGTTTGTAGAGATTAAATATATGTTTTGAAAGATAAAAGGGCCTTTTTATCGCACTATTATGATAGGAATTAT
AGGGAAGAGGGGAAACTCAA

Downstream 100 bases:

>100_bases
AAGGAGAGAAAATATAATGAAAAACTTACAAAGTACAACAACATTGCATAACGGTGTAGAAATGCCTTGGTTTGGTTTAG
GTGTATTTAAAGTAGAAGAA

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNSYTASSSEVKTSRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAFGAPVLTSLTAN
MSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGA
PIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKR
DQVK

Sequences:

>Translated_404_residues
MNSYTASSSEVKTSRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAFGAPVLTSLTAN
MSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGA
PIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKR
DQVK
>Mature_404_residues
MNSYTASSSEVKTSRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAFGAPVLTSLTAN
MSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGA
PIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKR
DQVK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=37.6119402985075, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1786595, Length=359, Percent_Identity=31.7548746518106, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1787808, Length=390, Percent_Identity=32.5641025641026, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI145693198, Length=360, Percent_Identity=26.6666666666667, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42551; Mature: 42551

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYTASSSEVKTSRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQFGWRTSFLAIV
CHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHCCHHHHHHHHH
VIGIIALIANSILIPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCEECCCCCCCCCCCCHHHCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKRDQVK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSYTASSSEVKTSRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQFGWRTSFLAIV
CHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHCCHHHHHHHHH
VIGIIALIANSILIPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCEECCCCCCCCCCCCHHHCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKRDQVK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]