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The map label for this gene is yybR [H]

Identifier: 222096794

GI number: 222096794

Start: 3089172

End: 3089561

Strand: Reverse

Name: yybR [H]

Synonym: BCQ_3134

Alternate gene names: 222096794

Gene position: 3089561-3089172 (Counterclockwise)

Preceding gene: 222096797

Following gene: 222096791

Centisome position: 59.25

GC content: 35.64

Gene sequence:

>390_bases
ATGGATTGTTCAAACGAAAATAATGTAAATTACCCGTTTTTAAATAAATATTCTTGTCCAGTGGAAGCGATGGTTGAGGT
CATTGGAGGGAAATGGAAAGGGGTAATTTTGTATCATCTATTAGATGGGACGAAGAGGTTTAATGAATTAAAAAGATTAA
AACCTAATATCACACAAAGAATGTTAACATTACAGCTGAGAGAACTTGAAGCAGATGGTATCATACATCGTGAAGTGTAC
CGTGAAGTACCTCCAAAAGTAGAATATTCGTTAACGGAGCTTGGTGAATCGCTTCGTCCAATGATTCTATTAATGATGGA
GTGGGCGACTCTTAATATGGAGAAAGTTTTGGAGAGTAGGAATACGAAAAATAATAGGAAAGAGTTGTAG

Upstream 100 bases:

>100_bases
TGTAACCAAATTATATTTTTAAAGTAACATAGAAACAAGTACGCACATTTATGTGGTATAGTATCAAAAAAGATACTAAT
GTTAAGGGAAGGGATTTATT

Downstream 100 bases:

>100_bases
AAATAAAAGGTGTTTTCCATATGTGAAGACACCTTTTATTTTCATGTTTTTACTTTTTAACATCAACTGCTGAAATTGCG
AAGTCATGCAAGTTTACAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATLNMEKVLESRNTKNNRKEL

Sequences:

>Translated_129_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATLNMEKVLESRNTKNNRKEL
>Mature_129_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATLNMEKVLESRNTKNNRKEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=105, Percent_Identity=37.1428571428571, Blast_Score=82, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15169; Mature: 15169

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPMILLMMEWATLNMEKVLESR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
NTKNNRKEL
CCCCCCCCC
>Mature Secondary Structure
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPMILLMMEWATLNMEKVLESR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
NTKNNRKEL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]