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The map label for this gene is rocB [H]

Identifier: 222096472

GI number: 222096472

Start: 2748854

End: 2750494

Strand: Reverse

Name: rocB [H]

Synonym: BCQ_2812

Alternate gene names: 222096472

Gene position: 2750494-2748854 (Counterclockwise)

Preceding gene: 222096473

Following gene: 222096470

Centisome position: 52.75

GC content: 35.34

Gene sequence:

>1641_bases
ATGTCAAAGTGGCAATCAAAAGAACAATTGATTCAATTATTAAGCGGTCTTGTTGAAATTCCTAGTATTACAGGTACAGA
AGCTGAAGTGATATTGCCAGACTTTGTTGTGGAACAATTATCTGATTTACAGTACTTCAAAGAAAACCCGCATCATTTGC
AAAAAAATCCGACGGGCGATGGACGATACTTTGTTACAGCACTAGTAAAGAAAAGTGACAGTACAAAAAATACCGTAGTT
CTTGTTAGTCACTTTGATGTTGTAGATGTGCAAGATTACGGCGTGTGGAAAGAAGATGCATTCAATCCTAAAAAGTTAAC
GTCTATGTTTTATTCTCATAAAGATGAATTACCGGCCCATGTACGTGAAGATTTAGAACATGGAGATTGGCTATTTGGTA
GAGGAACAATGGATATGAAATGCGGCCTCGCATTACAAATGGCAATGATTGAGCAAGCTTGCGAAGAAAGATTTGATGGG
AATGTTCTTTTATTGGCTGTACCAGATGAAGAAGTAAACTCTGTAGGGATGAGAGCTGCTGTTCCAAGATTACTAGAGTT
AGCAAGAGAACATGATTTAGAGTATAAAACGGTACTAAATTCAGAGCCTATGTTTTCAAGGCACCCTGGTGATCAAAAGA
AATATATTTATACTGGTTCTATTGGTAAAGTGTTACCTGGTTTTCTTTGCTACGGAAAAGAGACACATGTAGGTGAACCT
TTTGCGGGCCTAAATGGGAGTTATATGGCTTCATTAATAACAGCAGAATTAGAGTTGAATACAGACCTTTGTGATATTGT
AGAAGGGGAAGCGAGTCCTCCGCCAACTAATTTACTTCAAAGGGACTTAAAGGAGGATTACTCTGTACAAATTCCGCATC
GTGCAGTCACATTATTTAATTTGTTTTTATTAGAAAAATCAATGACAGATGTCGTTTCATTGCTGCGTCAAAAAGTAACG
AAAGTAGCAGAGAAAATAGAAGAGTCGTATGAAAAACATGCATATTGTTTTTCTAAATATAATCCATTCATACCACCTAA
CCTCAAAGTAAATGTATTAACGTATGAAGAGCTTATCGCATATGCAATTGAACAACATGGGCAAGAGAAAATAAATGAAA
TTCAATCTAGCATTATAAAAAATAGAGAAGATAAAGATGATCGTGCGGTAACGATTGATTTAGTAGATAAATTAGCCATC
TTATGTAAAGAAAAAGCACCGATGATTGTACTTTTCTTTGCTCCGCCATATTATCCAGCTGTAAGTTCACGCAACAACCA
ATTAATTAAAGAGGTAGTTGGAGAGATGGAAAAGTATGCAAACTTCAATCATAATATTTCATTTGAAAACCAAAACTATT
TTGGAGGAATTTCAGATTTGAGTTATGTGGGCTTACAGAATCCATTACATTCAATGAGTTCACTTGTAGACAATATGCCA
TTATGGGATAAAGGTTACTCAATTCCACTTCAGGAACTAGAAGAATTTGATGTTCCAGTTTTAAATATGGGACCGGTAGG
AAAAGATGCACATCAATGGACAGAACGTCTAGATGTAAATTACGCATTTGAAACGCTATTAGACATGTTACCGATTTGCA
TTGAAAAATTACTTGTTTCTAATAAAATTACACAAGTATAG

Upstream 100 bases:

>100_bases
AATCGGCAGTACATCAGAACTATAATTTTGATAACTGCCGTCATTTTTTATTCATATATTGGAATTAATTTTCATAATGC
GGAAAAATAGGGGGATTTAT

Downstream 100 bases:

>100_bases
TAGGGAAGGGAAATTATTTTAATATAATTAACAACTAAAACGGCCAAACTCAAGTAAATTCGAGTTTGGCCGTTTATCAT
GTAGTGCATTTCTAATGAAA

Product: rocb protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MSKWQSKEQLIQLLSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVV
LVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDLEHGDWLFGRGTMDMKCGLALQMAMIEQACEERFDG
NVLLLAVPDEEVNSVGMRAAVPRLLELAREHDLEYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKHAYCFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKINEIQSSIIKNREDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNQLIKEVVGEMEKYANFNHNISFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV

Sequences:

>Translated_546_residues
MSKWQSKEQLIQLLSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVV
LVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDLEHGDWLFGRGTMDMKCGLALQMAMIEQACEERFDG
NVLLLAVPDEEVNSVGMRAAVPRLLELAREHDLEYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKHAYCFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKINEIQSSIIKNREDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNQLIKEVVGEMEKYANFNHNISFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV
>Mature_545_residues
SKWQSKEQLIQLLSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVVL
VSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDLEHGDWLFGRGTMDMKCGLALQMAMIEQACEERFDGN
VLLLAVPDEEVNSVGMRAAVPRLLELAREHDLEYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEPF
AGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVTK
VAEKIEESYEKHAYCFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKINEIQSSIIKNREDKDDRAVTIDLVDKLAIL
CKEKAPMIVLFFAPPYYPAVSSRNNQLIKEVVGEMEKYANFNHNISFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMPL
WDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV

Specific function: Unknown

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis rocB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR012166 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 61985; Mature: 61853

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKWQSKEQLIQLLSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGD
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVVLVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHCCCCCCHH
VREDLEHGDWLFGRGTMDMKCGLALQMAMIEQACEERFDGNVLLLAVPDEEVNSVGMRAA
HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
VPRLLELAREHDLEYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKHAYCFSKYNPFIPPNLKVNVLTYEELIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGQEKINEIQSSIIKNREDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNQLIKEVVGEMEKYANFNHNISFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQV
HHHCCC
>Mature Secondary Structure 
SKWQSKEQLIQLLSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGD
CCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVVLVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHCCCCCCHH
VREDLEHGDWLFGRGTMDMKCGLALQMAMIEQACEERFDGNVLLLAVPDEEVNSVGMRAA
HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
VPRLLELAREHDLEYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKHAYCFSKYNPFIPPNLKVNVLTYEELIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGQEKINEIQSSIIKNREDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNQLIKEVVGEMEKYANFNHNISFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQV
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]