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The map label for this gene is 222096292

Identifier: 222096292

GI number: 222096292

Start: 2579444

End: 2580130

Strand: Reverse

Name: 222096292

Synonym: BCQ_2632

Alternate gene names: NA

Gene position: 2580130-2579444 (Counterclockwise)

Preceding gene: 222096296

Following gene: 222096291

Centisome position: 49.48

GC content: 33.19

Gene sequence:

>687_bases
TTGTGCACAAAAGTTACTCATATTTTAAAGAATCATATCGATATGAATCATTCAAATATAAATTTTTTAATTGAGCAATA
TGGAGAGTTAAAAAGATACTGTACTTTTTTAACGAAAAACAAATGGGATGGGGAAGATCTCGCCCAAGAAACAGTGTGTA
AAGTACTTCAAAAATATAGAAATAAAGATATTTGTATGGCACTCGTCTATAAAATAGCAAGAAATCGTTGGTTAGATCAG
ATGAAGTCTAAGTCTGTTCATGAAAAAATAAGAGAACAAATCACTTTTGAAGAGCCACAAGAGAATATTGCAGATTTGCA
TGAAATGGTAGGGAAAGTATTATCTTCATTAACTGTACAGCAATCCACGATTTTATTATTAAAGGATGTTTTTCAATATA
GTATCGCTGATATTGCTAAAGTATGTTCCGTATCGGAAGGGGCAGTAAAAGCTTCTTTGTTTCGGAGTAGAAATAGGTTG
AAAACTGTAAGTGAAGAAGGGATTGAGATAGTTGAATTCACAGATGATATGGAAGTTGTAGTGACGTCTATTCGAGAGGA
GAGACCGGAATTATTAACGAAACTGCTTCCGACAATAGATTTTACTAAGTTACCATCTAAACAGCCAGTCTTATTATTTA
ATGTGAAACAATCCTCTTCCTACAGTTGTATGCTTTGCGCGGCATAA

Upstream 100 bases:

>100_bases
CCGCGAATTATTGAACATAAACATAATTTTTTTATATGCCCCGTAACTTTTTTATTTGTTGAATCGTTAATTAAGTAAGC
GCTGAAAAGGAGTGGTTATT

Downstream 100 bases:

>100_bases
AAATTATTGGAGGGATTTAAAATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATAT
ATATTCAAGGTTATTGAAAG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Factor Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; DNA-Directed RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Ecf-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MCTKVTHILKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMALVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPQENIADLHEMVGKVLSSLTVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKQSSSYSCMLCAA

Sequences:

>Translated_228_residues
MCTKVTHILKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMALVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPQENIADLHEMVGKVLSSLTVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKQSSSYSCMLCAA
>Mature_228_residues
MCTKVTHILKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMALVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPQENIADLHEMVGKVLSSLTVQQSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTDDMEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKQSSSYSCMLCAA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26271; Mature: 26271

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTKVTHILKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMALVYKIARNRWLDQMKSKSVHEKIREQITFEEPQENIADLHEMVGKVLSSLTVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKQSSSYSCMLCAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEECC
>Mature Secondary Structure
MCTKVTHILKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMALVYKIARNRWLDQMKSKSVHEKIREQITFEEPQENIADLHEMVGKVLSSLTVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QSTILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKQSSSYSCMLCAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA