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The map label for this gene is yfmR [H]

Identifier: 222095794

GI number: 222095794

Start: 2102382

End: 2102960

Strand: Direct

Name: yfmR [H]

Synonym: BCQ_2134

Alternate gene names: 222095794

Gene position: 2102382-2102960 (Clockwise)

Preceding gene: 222095793

Following gene: 222095795

Centisome position: 40.32

GC content: 37.31

Gene sequence:

>579_bases
ATGAAAATGTTAACTGTGGAAAACTTATCAAAATCATATGGAGAGAAACCGTTATTTGATGGATTATCATTTAGTATTGC
AGAAGGACAACGTGCCGGAATTATCGGTGTAAATGGTACTGGTAAATCAACGTTGTTAAAAATTATTGCAGGGGCAGAAA
TTCCTGACACAGGTGATATGACTCATTCACGTGGGTATACAATTAGTTATTTATCACAGCAACCAGAGTTTGATGAACAA
TTAACAGTATTAGAACAAGTCTTCCATGGTGATACACCTTTAATTCGTCTTCTTCGTGATTATGAAAAGGCGCTATTACA
TATCGAAAAAGATCCAAGTAATGAAAAGGTACAGGAACAATTATTTGCAGTGCAACAACGTATGGACGCAATGAGTGCGT
GGGAAGCAAATGCGAATGCAAAATCGTTATTAACGAAACTAGGAATTACGGATTTCACAGCAACTGTTGGAAATTTATCT
GGTGGGCAGAAAAAACGTATTGCGATGGCGCAGTGTTTTATTGAAACACCGGATCTATTAATTTTAGATGAGCCTACGAA
CCATCTTGTGCGCCCATAA

Upstream 100 bases:

>100_bases
ACTTAATGAATACGAATGCAGCAAAAAAAGAGGCTGAAGTTCGTCATCGTTATATGGAACAGTTTATTGAACAATTTATG
AAAGAGTGGAATGCACAAAT

Downstream 100 bases:

>100_bases
GGACTGCATTGGAATGCTTCTGAAATGAAGCTAGGATTAACGACATCCTATTGTCAACCACCTTATCCGGAAGGGAAACC
TAAAGGGGAGTGTAGCATGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKMLTVENLSKSYGEKPLFDGLSFSIAEGQRAGIIGVNGTGKSTLLKIIAGAEIPDTGDMTHSRGYTISYLSQQPEFDEQ
LTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQLFAVQQRMDAMSAWEANANAKSLLTKLGITDFTATVGNLS
GGQKKRIAMAQCFIETPDLLILDEPTNHLVRP

Sequences:

>Translated_192_residues
MKMLTVENLSKSYGEKPLFDGLSFSIAEGQRAGIIGVNGTGKSTLLKIIAGAEIPDTGDMTHSRGYTISYLSQQPEFDEQ
LTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQLFAVQQRMDAMSAWEANANAKSLLTKLGITDFTATVGNLS
GGQKKRIAMAQCFIETPDLLILDEPTNHLVRP
>Mature_192_residues
MKMLTVENLSKSYGEKPLFDGLSFSIAEGQRAGIIGVNGTGKSTLLKIIAGAEIPDTGDMTHSRGYTISYLSQQPEFDEQ
LTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQLFAVQQRMDAMSAWEANANAKSLLTKLGITDFTATVGNLS
GGQKKRIAMAQCFIETPDLLILDEPTNHLVRP

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI10947137, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI27881506, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI10947135, Length=193, Percent_Identity=31.6062176165803, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI69354671, Length=193, Percent_Identity=31.6062176165803, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI2367384, Length=176, Percent_Identity=30.1136363636364, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787182, Length=189, Percent_Identity=29.1005291005291, Blast_Score=97, Evalue=5e-22,
Organism=Escherichia coli, GI1789751, Length=191, Percent_Identity=32.9842931937173, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787041, Length=191, Percent_Identity=33.5078534031414, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=30.2564102564103, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=24.7474747474747, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789873, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788644, Length=188, Percent_Identity=31.9148936170213, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=195, Percent_Identity=35.8974358974359, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17555318, Length=191, Percent_Identity=31.413612565445, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559834, Length=190, Percent_Identity=31.5789473684211, Blast_Score=80, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6320874, Length=166, Percent_Identity=33.7349397590361, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24642252, Length=188, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI18859989, Length=188, Percent_Identity=31.9148936170213, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24666836, Length=193, Percent_Identity=30.0518134715026, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641342, Length=193, Percent_Identity=30.0518134715026, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 21195; Mature: 21195

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLTVENLSKSYGEKPLFDGLSFSIAEGQRAGIIGVNGTGKSTLLKIIAGAEIPDTGDM
CCEEEHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCC
THSRGYTISYLSQQPEFDEQLTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQ
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHH
LFAVQQRMDAMSAWEANANAKSLLTKLGITDFTATVGNLSGGQKKRIAMAQCFIETPDLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEE
ILDEPTNHLVRP
EEECCHHCCCCC
>Mature Secondary Structure
MKMLTVENLSKSYGEKPLFDGLSFSIAEGQRAGIIGVNGTGKSTLLKIIAGAEIPDTGDM
CCEEEHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCC
THSRGYTISYLSQQPEFDEQLTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQ
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHH
LFAVQQRMDAMSAWEANANAKSLLTKLGITDFTATVGNLSGGQKKRIAMAQCFIETPDLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEE
ILDEPTNHLVRP
EEECCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]