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The map label for this gene is appB [H]

Identifier: 222094656

GI number: 222094656

Start: 985447

End: 986397

Strand: Direct

Name: appB [H]

Synonym: BCQ_0994

Alternate gene names: 222094656

Gene position: 985447-986397 (Clockwise)

Preceding gene: 222094655

Following gene: 222094657

Centisome position: 18.9

GC content: 36.07

Gene sequence:

>951_bases
GTGTATAAAGTAATTGCGAAGAGGCTTTTAAATGCAATTCCGCTTTTATTTGTTATTTCTATTATTTCTTTTCTATTAAT
AAAACTAGCGCCAGGTGATCCTGTTCGAAACTTTGTCACACCGAATATGAGTCCAATTGATGTTGAGCGTATTCGCAAAA
GTTTAGGGCTCGATCAACCAATTTATATGCAGTATATTTTATGGCTGAAAAATATTTTAACAGGGAACTTTGGTTACTCA
CTGCAAAATCACCGTCCTGTTTTAGATCTTATTGTAGAAAGGTTACCTGCGACAATCGGCTTAATGGGATCGTCTTTACT
CGTCTCATTTGTAATTGCAATCCCGCTTGGACTACTTACAGGTGTGAAAAAGAATTCTATCTTTGATCGCATTGTAAACT
TTATTTCTTATGTGGGAATCTCAATGCCAGTCTTTTGGTTCGCGTTACTATTAATCTACTTGTTCTCTTTAAAGTTGAAT
TTTCTTCCAAGTATGGGTATGCGTACAGTCGGGCAAGATTCCTTCTTGGATATTGTGCAGCACGGTATTTTACCTTGTAT
GGTGCTTGCGTTCCAAAACGTTTCAGTTTATATGAGATATATTCGTTCCAGTACAATTCAACAATTAGAAGAAGACTATG
TACAAATTCAATATGCGTACGGTGCTTCAAAGAAAACAGTTTTATTTAATCACGTACTGCGAAACGTATTAATACCGATC
ATTACAATTTTCGGATTATCTATTCCAAGTTTAGTGGGCGGAGCGTTTATTACGGAAACAGTATTTTCATGGCCAGGTCT
TGGTTCACTTGGGGTAAATGCTATTTTTAGATTTGATTATCCAATTATTATGGCAATTACATTACTATCGTCCTTCATGT
TGATTCTCGGTAACTTAATTGCTGATATTTTATATGGCGTAGTAGATCCACGCATTCGAATGAGGGGGTGA

Upstream 100 bases:

>100_bases
CAATGTTTGAAGATTTATCTAAGATTTATGAAGTGAAATAAGAAACAAACAGTAAAGAAGCTGGTGGAAATCAGCTTCTT
TAGCTTGAGGGGGGAAGTTT

Downstream 100 bases:

>100_bases
TTTGGAATGAATCATAGGAGATTTCAAACGATAAAAAGTAGTTTTACGAAAAATAAGTTTGTACTAATGGGAGTTATTAT
ACTGGCGGTTTTAACGGTCG

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
FLPSMGMRTVGQDSFLDIVQHGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Sequences:

>Translated_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
FLPSMGMRTVGQDSFLDIVQHGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG
>Mature_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
FLPSMGMRTVGQDSFLDIVQHGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=39.3650793650794, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.7988165680473, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=37.1875, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=35.2238805970149, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=30.5732484076433, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.6176470588235, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.0112044817927, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35473; Mature: 35473

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLNFLPSMGMRTVGQDSFLDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHH
HGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC
>Mature Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLLT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLNFLPSMGMRTVGQDSFLDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHH
HGILPCMVLAFQNVSVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]