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The map label for this gene is prdF

Identifier: 222094650

GI number: 222094650

Start: 979794

End: 980798

Strand: Direct

Name: prdF

Synonym: BCQ_0988

Alternate gene names: NA

Gene position: 979794-980798 (Clockwise)

Preceding gene: 222094648

Following gene: 222094651

Centisome position: 18.79

GC content: 41.0

Gene sequence:

>1005_bases
ATGAAGGTTAGTAAAGTGTATACGACAATTGATGCTCACGTAGCTGGGGAACCACTTCGAATTATTACAGGAGGCGTGCC
AGAAATAAAGGGAGAAACGCAGCTAGAAAGACGTGCATATTGCATGGAACATTTGGATCATCTTCGCGAGGTTCTTATGT
ATGAACCGAGAGGACATCACGGTATGTACGGTTGTATCATTACACCGCCAGCAAGTGCACACGCTGATTTTGGTGTGTTA
TTTATGCACAATGAAGGATGGAGTACGATGTGTGGACACGGCATTATTGCTGTTATTGCAGTAGGAATTGAGACAGGTAT
GTTTGAAGTGACAGGTGAGAAACAAAAGTTCATTATTGATAGCCCTGCTGGGGAAGTCATTGCGTACGCAAAATATAATG
GGAGCGAAGTAGAGTCTGTATCATTTGAAAATATTCCTTCATTTGTATACAAAAAAGACGTTCCTATTAAAATAGATAAC
TATGAATTTCAAGTAGATATCGCGTTTGGTGGAGCTTTTTATGCTGTTGTAGATAGTAAAGAATTTGGTTTGAAAGTTGA
TTTTAAAGACTTAGCTGCTATTCAAACGTGGGGCGGTAAAATTAAGCGCTACATTGAGAGTCAGATGGAAGTGAAGCACC
CACTTGAAGAAGGGTTAAAAGGAATATACGGCGTTATTTTCTCAGATGAACCGAAAGGGGAAGGCGCAACGTTACGAAAT
GTAACGATTTTTGCTGACGGGCAAGTAGATCGTTCTCCTTGTGGCACAGGAACTTCCGCAAGAATCGCAACTCTTTTTGA
AAAAGGCGCTCTGCAAAAAGGAGAAATTTTCGTCCACGAATGCATTACTGATGGGAAATTCGAGGGAGAAGTATTGTCGG
TAACAGCGGTACATACATATGAAGCTGTTGTTCCGAAAGTAACGGGGCATGCATTTATTACAGGATTTCATCAGTTCGTT
ATAGACCCGAGAGATGATTTGAATCGGGGATTTTTGTTAGGATAG

Upstream 100 bases:

>100_bases
TGGTGTATGCTTTTTTAAACAATGTATACAAATTTATACCCTATGCGTTGGCATGATATTTGCAATAAAAAGAGTATCAA
CATATAGGGGAGAGATGGAA

Downstream 100 bases:

>100_bases
AAGAAGGAGGTGGAAAGATATGCTAGTCCTAAGCGCGAACGAACAACGAAACTTAGTAAATATGAATGAAGTCATTGAAT
ATGCGGCGCTTGCCTTAAAA

Product: proline racemase

Products: D-proline

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKVSKVYTTIDAHVAGEPLRIITGGVPEIKGETQLERRAYCMEHLDHLREVLMYEPRGHHGMYGCIITPPASAHADFGVL
FMHNEGWSTMCGHGIIAVIAVGIETGMFEVTGEKQKFIIDSPAGEVIAYAKYNGSEVESVSFENIPSFVYKKDVPIKIDN
YEFQVDIAFGGAFYAVVDSKEFGLKVDFKDLAAIQTWGGKIKRYIESQMEVKHPLEEGLKGIYGVIFSDEPKGEGATLRN
VTIFADGQVDRSPCGTGTSARIATLFEKGALQKGEIFVHECITDGKFEGEVLSVTAVHTYEAVVPKVTGHAFITGFHQFV
IDPRDDLNRGFLLG

Sequences:

>Translated_334_residues
MKVSKVYTTIDAHVAGEPLRIITGGVPEIKGETQLERRAYCMEHLDHLREVLMYEPRGHHGMYGCIITPPASAHADFGVL
FMHNEGWSTMCGHGIIAVIAVGIETGMFEVTGEKQKFIIDSPAGEVIAYAKYNGSEVESVSFENIPSFVYKKDVPIKIDN
YEFQVDIAFGGAFYAVVDSKEFGLKVDFKDLAAIQTWGGKIKRYIESQMEVKHPLEEGLKGIYGVIFSDEPKGEGATLRN
VTIFADGQVDRSPCGTGTSARIATLFEKGALQKGEIFVHECITDGKFEGEVLSVTAVHTYEAVVPKVTGHAFITGFHQFV
IDPRDDLNRGFLLG
>Mature_334_residues
MKVSKVYTTIDAHVAGEPLRIITGGVPEIKGETQLERRAYCMEHLDHLREVLMYEPRGHHGMYGCIITPPASAHADFGVL
FMHNEGWSTMCGHGIIAVIAVGIETGMFEVTGEKQKFIIDSPAGEVIAYAKYNGSEVESVSFENIPSFVYKKDVPIKIDN
YEFQVDIAFGGAFYAVVDSKEFGLKVDFKDLAAIQTWGGKIKRYIESQMEVKHPLEEGLKGIYGVIFSDEPKGEGATLRN
VTIFADGQVDRSPCGTGTSARIATLFEKGALQKGEIFVHECITDGKFEGEVLSVTAVHTYEAVVPKVTGHAFITGFHQFV
IDPRDDLNRGFLLG

Specific function: Unknown

COG id: COG3938

COG function: function code E; Proline racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline racemase family [H]

Homologues:

Organism=Homo sapiens, GI21389361, Length=340, Percent_Identity=36.4705882352941, Blast_Score=226, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008794 [H]

Pfam domain/function: PF05544 Pro_racemase [H]

EC number: 5.1.1.4

Molecular weight: Translated: 36746; Mature: 36746

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSKVYTTIDAHVAGEPLRIITGGVPEIKGETQLERRAYCMEHLDHLREVLMYEPRGHH
CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCC
GMYGCIITPPASAHADFGVLFMHNEGWSTMCGHGIIAVIAVGIETGMFEVTGEKQKFIID
CEEEEEECCCCCCCCCEEEEEEECCCCCCHHCCCEEEEEEEHHCCCEEEEECCCCEEEEE
SPAGEVIAYAKYNGSEVESVSFENIPSFVYKKDVPIKIDNYEFQVDIAFGGAFYAVVDSK
CCCCCEEEEEECCCCCEEEECCCCCCHHHCCCCCCEEECCEEEEEEEEECCEEEEEEECC
EFGLKVDFKDLAAIQTWGGKIKRYIESQMEVKHPLEEGLKGIYGVIFSDEPKGEGATLRN
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHEEEEEECCCCCCCCCEEEE
VTIFADGQVDRSPCGTGTSARIATLFEKGALQKGEIFVHECITDGKFEGEVLSVTAVHTY
EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEH
EAVVPKVTGHAFITGFHQFVIDPRDDLNRGFLLG
HHHCCCCCCCCEEEEEEHEEECCHHCCCCCCCCC
>Mature Secondary Structure
MKVSKVYTTIDAHVAGEPLRIITGGVPEIKGETQLERRAYCMEHLDHLREVLMYEPRGHH
CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCC
GMYGCIITPPASAHADFGVLFMHNEGWSTMCGHGIIAVIAVGIETGMFEVTGEKQKFIID
CEEEEEECCCCCCCCCEEEEEEECCCCCCHHCCCEEEEEEEHHCCCEEEEECCCCEEEEE
SPAGEVIAYAKYNGSEVESVSFENIPSFVYKKDVPIKIDNYEFQVDIAFGGAFYAVVDSK
CCCCCEEEEEECCCCCEEEECCCCCCHHHCCCCCCEEECCEEEEEEEEECCEEEEEEECC
EFGLKVDFKDLAAIQTWGGKIKRYIESQMEVKHPLEEGLKGIYGVIFSDEPKGEGATLRN
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHEEEEEECCCCCCCCCEEEE
VTIFADGQVDRSPCGTGTSARIATLFEKGALQKGEIFVHECITDGKFEGEVLSVTAVHTY
EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEH
EAVVPKVTGHAFITGFHQFVIDPRDDLNRGFLLG
HHHCCCCCCCCEEEEEEHEEECCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-proline

Specific reaction: L-proline = D-proline

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]