Click here to switch to the map view.

The map label for this gene is insF1 [H]

Identifier: 222094111

GI number: 222094111

Start: 392039

End: 392872

Strand: Reverse

Name: insF1 [H]

Synonym: BCQ_0404

Alternate gene names: 222094111

Gene position: 392872-392039 (Counterclockwise)

Preceding gene: 222094112

Following gene: 222094107

Centisome position: 7.53

GC content: 38.61

Gene sequence:

>834_bases
GTGAAGAATAACCTACATAAATACTCGATATCAGCAATGTGCAATGTCCTACAATTATCAAGAGCAACGTATTACTATGA
GGCAAAACAAGCACAACATACAGGCGATGAATTGTCACCACTCGTGAAAGAAATCTTCCGAGAGAGCCGTCAGAACTATG
GAACACGAAAAATAAAAGTGGAATTGAAGAAATTAGGATATGTGATTTCACGTCGTCGTATTGGACGAATCATGCAAAAC
CAAGGTTTAGTATCTAACTATACGATTGCACAATTTAAGCCACAGAGAGTTAGCTGTAATGAAGAAAAAATTTCAAACGA
ACTTGATCGTCAGTTTAACCAGAAAGAAGAACTGGCTGTAGTCGTAAGTGATTTAACATACGTCCGTGTGAACAAAAAGT
GGAATTACGTATGTTTATTAGTTGATCTCTTTAATCGAGAAATCATAGGACATAGCGCAGGCCAAAAGAAAGATGCCGCG
CTTGTTTCGCAAGCTTTCGCAACGGTGAAAGCAAACTTGAATCGGATTACCTTATTTCATACAGACCGAGGAAATGAGTT
CAAAAACAAGCTGATTCATGAAACGTTAGAGACCTTCCAAATCAAGCGTTCATTAAGTGCAAAAGGCTGTCCATACGATA
ATGCGGTAGCGGAAGCAACCTACAAAATCTTTAAAACAGAGTTCGTCCGCGGTCGTCATTTCGCAAGTTTAGAAGAATTG
ACCTTAGAATTGAACGACTACGTAAACTGGTTTAACAATGTTAGAATCCATGGAACACTAGACTATTTGAGTCCTGTTCA
GTACAGGCAGGAACACCTTAAAAAAATTGTCTAG

Upstream 100 bases:

>100_bases
AACTAGAATTGGAAGCTTTGAGAAAACAAAACAAACAGCTTCTTATGGAAAATGACATTTTAAAGCAAGCGGCGCTGATA
CTAGGACGAAAGTAAAAGTA

Downstream 100 bases:

>100_bases
TTTCGTGTTGACATACCATTTATCATACTCTAATTACTAATTTAAAATAAGATAAAAGATGCTATGAAAGTTCTTATAAG
AACTTTCATAGCATCTTTTT

Product: transposase (06)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKNNLHKYSISAMCNVLQLSRATYYYEAKQAQHTGDELSPLVKEIFRESRQNYGTRKIKVELKKLGYVISRRRIGRIMQN
QGLVSNYTIAQFKPQRVSCNEEKISNELDRQFNQKEELAVVVSDLTYVRVNKKWNYVCLLVDLFNREIIGHSAGQKKDAA
LVSQAFATVKANLNRITLFHTDRGNEFKNKLIHETLETFQIKRSLSAKGCPYDNAVAEATYKIFKTEFVRGRHFASLEEL
TLELNDYVNWFNNVRIHGTLDYLSPVQYRQEHLKKIV

Sequences:

>Translated_277_residues
MKNNLHKYSISAMCNVLQLSRATYYYEAKQAQHTGDELSPLVKEIFRESRQNYGTRKIKVELKKLGYVISRRRIGRIMQN
QGLVSNYTIAQFKPQRVSCNEEKISNELDRQFNQKEELAVVVSDLTYVRVNKKWNYVCLLVDLFNREIIGHSAGQKKDAA
LVSQAFATVKANLNRITLFHTDRGNEFKNKLIHETLETFQIKRSLSAKGCPYDNAVAEATYKIFKTEFVRGRHFASLEEL
TLELNDYVNWFNNVRIHGTLDYLSPVQYRQEHLKKIV
>Mature_277_residues
MKNNLHKYSISAMCNVLQLSRATYYYEAKQAQHTGDELSPLVKEIFRESRQNYGTRKIKVELKKLGYVISRRRIGRIMQN
QGLVSNYTIAQFKPQRVSCNEEKISNELDRQFNQKEELAVVVSDLTYVRVNKKWNYVCLLVDLFNREIIGHSAGQKKDAA
LVSQAFATVKANLNRITLFHTDRGNEFKNKLIHETLETFQIKRSLSAKGCPYDNAVAEATYKIFKTEFVRGRHFASLEEL
TLELNDYVNWFNNVRIHGTLDYLSPVQYRQEHLKKIV

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=242, Percent_Identity=28.099173553719, Blast_Score=114, Evalue=1e-25,
Organism=Escherichia coli, GI1788405, Length=277, Percent_Identity=28.5198555956679, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787263, Length=277, Percent_Identity=28.5198555956679, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1786753, Length=277, Percent_Identity=28.5198555956679, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1786570, Length=277, Percent_Identity=28.5198555956679, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1786490, Length=277, Percent_Identity=28.5198555956679, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1789981, Length=271, Percent_Identity=27.3062730627306, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32305; Mature: 32305

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNLHKYSISAMCNVLQLSRATYYYEAKQAQHTGDELSPLVKEIFRESRQNYGTRKIKV
CCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEE
ELKKLGYVISRRRIGRIMQNQGLVSNYTIAQFKPQRVSCNEEKISNELDRQFNQKEELAV
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHE
VVSDLTYVRVNKKWNYVCLLVDLFNREIIGHSAGQKKDAALVSQAFATVKANLNRITLFH
EEECCEEEEECCCCCEEEEEEEHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
TDRGNEFKNKLIHETLETFQIKRSLSAKGCPYDNAVAEATYKIFKTEFVRGRHFASLEEL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
TLELNDYVNWFNNVRIHGTLDYLSPVQYRQEHLKKIV
HHHHHHHHHHHHCEEEEEEHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure
MKNNLHKYSISAMCNVLQLSRATYYYEAKQAQHTGDELSPLVKEIFRESRQNYGTRKIKV
CCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEE
ELKKLGYVISRRRIGRIMQNQGLVSNYTIAQFKPQRVSCNEEKISNELDRQFNQKEELAV
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHE
VVSDLTYVRVNKKWNYVCLLVDLFNREIIGHSAGQKKDAALVSQAFATVKANLNRITLFH
EEECCEEEEECCCCCEEEEEEEHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
TDRGNEFKNKLIHETLETFQIKRSLSAKGCPYDNAVAEATYKIFKTEFVRGRHFASLEEL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
TLELNDYVNWFNNVRIHGTLDYLSPVQYRQEHLKKIV
HHHHHHHHHHHHCEEEEEEHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]