| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636299
Identifier: 221636299
GI number: 221636299
Start: 875434
End: 875826
Strand: Reverse
Name: 221636299
Synonym: trd_A0893
Alternate gene names: NA
Gene position: 875826-875434 (Counterclockwise)
Preceding gene: 221636301
Following gene: 221636298
Centisome position: 95.43
GC content: 66.92
Gene sequence:
>393_bases ATGCTACTGCCTACTGACTGGCGGAAGTACCGAACGAGTGTCAGTGAGGAAGACGAGAAGCACGGCGCGCTCTCGCCGGG AGCCAAGAGCGACCCTGTCCAAAGAAACGACCTCGCCCCTCAGCTGAGGTTGCTCGCCGGCTCCGAGGGGCGATTCACCG ATCAGCTCGTCGCCGACGAGCTGGCGGAGACGATCGCCTCGGCTGACCTCGTGCGCGGGTACCAGCCTCTCGCCGCGAGG CTGCTTCTCCAGGAGCAGGGGCGCGAGGTCTACCTACCCTGGAGGGGGCTCGAGCCGCTGGACGACGGGCATGCCGTTGC TCGCTCCGTACCGGCTGCAGCACTGTCCCCTCGTGCACCGGAGACCAGTCCGGTGGGTGCTGGACGAGACTGA
Upstream 100 bases:
>100_bases AGAAACGCTCGATCGATCGTTCCGGACCCGTCAGTCGTCATCGTCAGCCTCCTGCGCTCTGCCGAAGCGCATGGCGAGTG TACGGGACAATCGGGAGCCG
Downstream 100 bases:
>100_bases GCTATCCGCGAACCTGGAGCGCCGGCTTGCCTGTCCTCTGCCTCCTGACCTGTTGCCGCACAGGCGCCCGGGTTCCAGCG CTGCAGGTCTGGCGTCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MLLPTDWRKYRTSVSEEDEKHGALSPGAKSDPVQRNDLAPQLRLLAGSEGRFTDQLVADELAETIASADLVRGYQPLAAR LLLQEQGREVYLPWRGLEPLDDGHAVARSVPAAALSPRAPETSPVGAGRD
Sequences:
>Translated_130_residues MLLPTDWRKYRTSVSEEDEKHGALSPGAKSDPVQRNDLAPQLRLLAGSEGRFTDQLVADELAETIASADLVRGYQPLAAR LLLQEQGREVYLPWRGLEPLDDGHAVARSVPAAALSPRAPETSPVGAGRD >Mature_130_residues MLLPTDWRKYRTSVSEEDEKHGALSPGAKSDPVQRNDLAPQLRLLAGSEGRFTDQLVADELAETIASADLVRGYQPLAAR LLLQEQGREVYLPWRGLEPLDDGHAVARSVPAAALSPRAPETSPVGAGRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14096; Mature: 14096
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLPTDWRKYRTSVSEEDEKHGALSPGAKSDPVQRNDLAPQLRLLAGSEGRFTDQLVADE CCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH LAETIASADLVRGYQPLAARLLLQEQGREVYLPWRGLEPLDDGHAVARSVPAAALSPRAP HHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCHHHCCCCCC ETSPVGAGRD CCCCCCCCCC >Mature Secondary Structure MLLPTDWRKYRTSVSEEDEKHGALSPGAKSDPVQRNDLAPQLRLLAGSEGRFTDQLVADE CCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH LAETIASADLVRGYQPLAARLLLQEQGREVYLPWRGLEPLDDGHAVARSVPAAALSPRAP HHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCHHHCCCCCC ETSPVGAGRD CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA