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The map label for this gene is ycdQ [C]

Identifier: 221636245

GI number: 221636245

Start: 823549

End: 825096

Strand: Reverse

Name: ycdQ [C]

Synonym: trd_A0839

Alternate gene names: 221636245

Gene position: 825096-823549 (Counterclockwise)

Preceding gene: 221636246

Following gene: 221636244

Centisome position: 89.91

GC content: 64.28

Gene sequence:

>1548_bases
ATGGCGAGCGCGAAGGAATTAGGCAGTATCGGTCGCATACGCCATGATCCGGAGCCCGCAGGCACGGCAGTTTGTCATCT
CTCACCGTGCCTGCGTGTCGTGCAGTGCGGTGACGCGGCTTGGCTGATCGCGACCCGTCCACTCCGCCTGCTGCGCGTTC
AGCCCCGCGTGGTGAAGCTGCTCGAGAAATTACGGGTGGACCCTGATGTCGGTCGCGTGGTGAAAAGCTTTCCTGACCTT
CGCTGGGAGACGGTGATTTCCTTCCTCGAACGGCTGGCTGACGAAGGGCTCGTCCGGTTGGTCTGGTCACTGCCGGACGA
AATGCTGCCGAGCGTGTCCGTGGTGATTCCGGTGCGCAACCGACCGGCTCAACTGAGTGCGTGCCTGGCGGCGCTCGAGT
GCCTCGACTACCCGCGCGAGCGACTCGAGATCCTGGTCGTCGACGACGCGTCGTCCGATGACACGGTGGCGAGGGCGGAA
ACGTGGCGGAATCGCTTGCCGCTGCGGGTGATTCGCCTGCCCGCGCCGGTCGGTGCCGCAGCATGCCGGAACCACGGTGC
GGAGCTCGCGCGGGGTGAGATTCTCGCGTTTACGGACAGCGATTGTCGTCCACATCCGCGTTGGCTGCGCGAGTTGGTGC
CGGAGTTCGTGCGGACCGGTGTCGTCGCCGTCGGGGGTGCCGTGTTGCCAGCTGACGACGACTCATGGCTCGACCGGTAC
GAGGCGGTGGAGTCACCGCTGACGCACGGGCCGGAGCCGGCACGGGTGCGACCGCGCGGCGCGGTGCCCTACCTCGTCAC
AGCTAATCTGCTGGTGCGGCGTCGGGCACTTTTGGAAGTCGGCGGATTCGCACGGATCCATCCAGGCGAAGATGTGGATC
TCGTCTGGCGGCTCTGCGAACGGGGAGGACGGGTTCTGTATCGACCAGCGGGTATCGTTCTCCACGATCACCGCGATCGG
CTCTGGCCGTTCCTGCACCGACGCGCTGCTTATGCGTCCTCCGAAGTAGTGCTGGTGCAGCGTCATCCACACTCTCGCCA
TCGGATGACGGTGCCAGCTGCCATGCTGGCGAGCATCGGCTGTGGGATCGGGGCAGGGCGACAGGAAGGCCTGGTGATGC
TCGCAATGCTGCCGCTGCTCGCTGATGTACTCGTTGCCTTCCAGCGGATCCGACGGTTGCGAGCTCCGGTATCGCTCGGA
GAACTGGTGCTGGCCGAGTTGCGGGGCATGTTGGTTGCATTCTACTGGATGGGGCGAACGATCAGTCGCTACTACAGTTG
GCCCGTCCTGGTCGCCGGGGTCATCTTCCGGCGCAGAGGGTTCGGGCGGTGGCTTTCCGTGCTCGTTGGAGCGAGCCTTC
TCGGGACAGCGAGTGTCGACTACATCCGCAAACGACCGAGCCTCGATCCGGTACGGTTCTTGCTCGCGCATCTGTGTGAC
GATTTGGCGAACAACTCGGGGCTTTTGGTCGGTTGTCTGCGCTCCGGGACCATTCGACCGCTTCTGGTGGAGCTCTCCCT
GTATTGGCCACGTGTCGAGAAATCTTAA

Upstream 100 bases:

>100_bases
CGCGTGCACCCGAGGCCGGTCCGGAGCCCGCGTCGTGCGGCGGTCGTCCCCGCGGCGCGATAACGGCGATTCTGGTTCCG
TGCGCCAAGGCCGAAGTTCC

Downstream 100 bases:

>100_bases
ACGTTCCGGGTTTGCACAGCCGAGTCGGGGTGCTGGCTGCGAGACGACGGAACTCCCTCCCGAAGTCAGTCGCGGTGTGT
ACGGCTCGCTGGGTCGCTGC

Product: probable membrane sugar transferase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MASAKELGSIGRIRHDPEPAGTAVCHLSPCLRVVQCGDAAWLIATRPLRLLRVQPRVVKLLEKLRVDPDVGRVVKSFPDL
RWETVISFLERLADEGLVRLVWSLPDEMLPSVSVVIPVRNRPAQLSACLAALECLDYPRERLEILVVDDASSDDTVARAE
TWRNRLPLRVIRLPAPVGAAACRNHGAELARGEILAFTDSDCRPHPRWLRELVPEFVRTGVVAVGGAVLPADDDSWLDRY
EAVESPLTHGPEPARVRPRGAVPYLVTANLLVRRRALLEVGGFARIHPGEDVDLVWRLCERGGRVLYRPAGIVLHDHRDR
LWPFLHRRAAYASSEVVLVQRHPHSRHRMTVPAAMLASIGCGIGAGRQEGLVMLAMLPLLADVLVAFQRIRRLRAPVSLG
ELVLAELRGMLVAFYWMGRTISRYYSWPVLVAGVIFRRRGFGRWLSVLVGASLLGTASVDYIRKRPSLDPVRFLLAHLCD
DLANNSGLLVGCLRSGTIRPLLVELSLYWPRVEKS

Sequences:

>Translated_515_residues
MASAKELGSIGRIRHDPEPAGTAVCHLSPCLRVVQCGDAAWLIATRPLRLLRVQPRVVKLLEKLRVDPDVGRVVKSFPDL
RWETVISFLERLADEGLVRLVWSLPDEMLPSVSVVIPVRNRPAQLSACLAALECLDYPRERLEILVVDDASSDDTVARAE
TWRNRLPLRVIRLPAPVGAAACRNHGAELARGEILAFTDSDCRPHPRWLRELVPEFVRTGVVAVGGAVLPADDDSWLDRY
EAVESPLTHGPEPARVRPRGAVPYLVTANLLVRRRALLEVGGFARIHPGEDVDLVWRLCERGGRVLYRPAGIVLHDHRDR
LWPFLHRRAAYASSEVVLVQRHPHSRHRMTVPAAMLASIGCGIGAGRQEGLVMLAMLPLLADVLVAFQRIRRLRAPVSLG
ELVLAELRGMLVAFYWMGRTISRYYSWPVLVAGVIFRRRGFGRWLSVLVGASLLGTASVDYIRKRPSLDPVRFLLAHLCD
DLANNSGLLVGCLRSGTIRPLLVELSLYWPRVEKS
>Mature_514_residues
ASAKELGSIGRIRHDPEPAGTAVCHLSPCLRVVQCGDAAWLIATRPLRLLRVQPRVVKLLEKLRVDPDVGRVVKSFPDLR
WETVISFLERLADEGLVRLVWSLPDEMLPSVSVVIPVRNRPAQLSACLAALECLDYPRERLEILVVDDASSDDTVARAET
WRNRLPLRVIRLPAPVGAAACRNHGAELARGEILAFTDSDCRPHPRWLRELVPEFVRTGVVAVGGAVLPADDDSWLDRYE
AVESPLTHGPEPARVRPRGAVPYLVTANLLVRRRALLEVGGFARIHPGEDVDLVWRLCERGGRVLYRPAGIVLHDHRDRL
WPFLHRRAAYASSEVVLVQRHPHSRHRMTVPAAMLASIGCGIGAGRQEGLVMLAMLPLLADVLVAFQRIRRLRAPVSLGE
LVLAELRGMLVAFYWMGRTISRYYSWPVLVAGVIFRRRGFGRWLSVLVGASLLGTASVDYIRKRPSLDPVRFLLAHLCDD
LANNSGLLVGCLRSGTIRPLLVELSLYWPRVEKS

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 57387; Mature: 57256

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAKELGSIGRIRHDPEPAGTAVCHLSPCLRVVQCGDAAWLIATRPLRLLRVQPRVVKL
CCCHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHH
LEKLRVDPDVGRVVKSFPDLRWETVISFLERLADEGLVRLVWSLPDEMLPSVSVVIPVRN
HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHCCHHHCCCEEEEEECCC
RPAQLSACLAALECLDYPRERLEILVVDDASSDDTVARAETWRNRLPLRVIRLPAPVGAA
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHH
ACRNHGAELARGEILAFTDSDCRPHPRWLRELVPEFVRTGVVAVGGAVLPADDDSWLDRY
HHHHCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCEEECCCCHHHHHHH
EAVESPLTHGPEPARVRPRGAVPYLVTANLLVRRRALLEVGGFARIHPGEDVDLVWRLCE
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH
RGGRVLYRPAGIVLHDHRDRLWPFLHRRAAYASSEVVLVQRHPHSRHRMTVPAAMLASIG
HCCCEEEECCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEHHHHHHHHHC
CGIGAGRQEGLVMLAMLPLLADVLVAFQRIRRLRAPVSLGELVLAELRGMLVAFYWMGRT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ISRYYSWPVLVAGVIFRRRGFGRWLSVLVGASLLGTASVDYIRKRPSLDPVRFLLAHLCD
HHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DLANNSGLLVGCLRSGTIRPLLVELSLYWPRVEKS
HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASAKELGSIGRIRHDPEPAGTAVCHLSPCLRVVQCGDAAWLIATRPLRLLRVQPRVVKL
CCHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHH
LEKLRVDPDVGRVVKSFPDLRWETVISFLERLADEGLVRLVWSLPDEMLPSVSVVIPVRN
HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHCCHHHCCCEEEEEECCC
RPAQLSACLAALECLDYPRERLEILVVDDASSDDTVARAETWRNRLPLRVIRLPAPVGAA
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHH
ACRNHGAELARGEILAFTDSDCRPHPRWLRELVPEFVRTGVVAVGGAVLPADDDSWLDRY
HHHHCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCEEECCCCHHHHHHH
EAVESPLTHGPEPARVRPRGAVPYLVTANLLVRRRALLEVGGFARIHPGEDVDLVWRLCE
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH
RGGRVLYRPAGIVLHDHRDRLWPFLHRRAAYASSEVVLVQRHPHSRHRMTVPAAMLASIG
HCCCEEEECCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEHHHHHHHHHC
CGIGAGRQEGLVMLAMLPLLADVLVAFQRIRRLRAPVSLGELVLAELRGMLVAFYWMGRT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ISRYYSWPVLVAGVIFRRRGFGRWLSVLVGASLLGTASVDYIRKRPSLDPVRFLLAHLCD
HHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DLANNSGLLVGCLRSGTIRPLLVELSLYWPRVEKS
HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]