| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636159
Identifier: 221636159
GI number: 221636159
Start: 739479
End: 740294
Strand: Reverse
Name: 221636159
Synonym: trd_A0753
Alternate gene names: NA
Gene position: 740294-739479 (Counterclockwise)
Preceding gene: 221636161
Following gene: 221636158
Centisome position: 80.67
GC content: 66.18
Gene sequence:
>816_bases ATGAGGCAACTGATCACCGTCGTCATCACCCTCGCACTGCTTGCAGCCGTTCCGTTCACGGTTTTGGCTGCGGGCCATGA GAAGGCGCAGCTCACTGTGGTGCACGGAGTCCCGGACCTGGTCGTGGATGTCTACGCCAACGATGCGAAGGTGCTGTCCA ATTTCACCTTCGGCACGGTGACCGATCCCCTGGCGCTCGATCCCGGTACCTACAAGCTGGCGATCCGGCCGGCCGGGGCT GACCCAGCGAGCGCTCCAGTCCTCTCGGCCGAAGCCACGTTGGCTGCTGGCCAGAACGCGTCGGTCGTCGCTCACCTGGA TGCCAACGGGCAGCCGCGCCTGAGCATCTTCGTCAACGACACATCCCCGGTGGCGAGCGGTAAGGGACGCCTCATCGTCC GCCATACTGCGCAGGCGCCGGCGGTGGACGTGCGGGCTGGTGGCGCGGTCGTATTCGCCAATCTGGCGAATCCGAACGAG GCCAAGGCGGACGTCGATGCCAAGACCTATTCGGTCGACCTGGCGCCGGCTGGGCAGGCGCAGGCTGTGTTCGGGCCGGT CGACTTGCCGGTGGCAGCCGGAGCAGCGACGATCGTCTATGCCATCGGATCGATCGAAAAAGGCTCCTTCCGGCTGGTGA CCCAGGTGATCACCGGTTTGGGTGCTCCACCCAGCCATGTCGGGACCGGTGGGGGTAGTGCCGCCAACGCGACGCTGCCG TTGACGGTCGCGGTGCTGGCCGCGCTGCTGGTGTTGGCTGGTAGTGCGGCGCTCGTCCGCGTGCCGGTTCGCATCGAACG CCGCAATCTCCGGTAA
Upstream 100 bases:
>100_bases CCTTGGCGCACGATGGGTGGTGCTGCTATACTACGGTTGCACGCGCGTGTAGGTAGGAGTTAGCATAAACAAAGATTAGG TAGAATCCAAGGGGGACGCC
Downstream 100 bases:
>100_bases TGGCGCCTCTCCCTCCCGTCGCAGCGGGTGCTCCGGTTTCGATCAGGGCACCCGCTGCTTTCGGTCGCAGACGTTCCCAG CGAGGATCGTCATGACCGCA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTVTDPLALDPGTYKLAIRPAGA DPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVNDTSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNE AKADVDAKTYSVDLAPAGQAQAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLP LTVAVLAALLVLAGSAALVRVPVRIERRNLR
Sequences:
>Translated_271_residues MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTVTDPLALDPGTYKLAIRPAGA DPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVNDTSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNE AKADVDAKTYSVDLAPAGQAQAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLP LTVAVLAALLVLAGSAALVRVPVRIERRNLR >Mature_271_residues MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTVTDPLALDPGTYKLAIRPAGA DPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVNDTSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNE AKADVDAKTYSVDLAPAGQAQAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLP LTVAVLAALLVLAGSAALVRVPVRIERRNLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27316; Mature: 27316
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTV CHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCC TDPLALDPGTYKLAIRPAGADPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVND CCCEEECCCCEEEEEEECCCCCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEEEEEC TSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNEAKADVDAKTYSVDLAPAGQA CCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC QAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLP CEEECCCCCCHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH LTVAVLAALLVLAGSAALVRVPVRIERRNLR HHHHHHHHHHHHCCCCEEEEEEEEEECCCCC >Mature Secondary Structure MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTV CHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCC TDPLALDPGTYKLAIRPAGADPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVND CCCEEECCCCEEEEEEECCCCCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEEEEEC TSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNEAKADVDAKTYSVDLAPAGQA CCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC QAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLP CEEECCCCCCHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH LTVAVLAALLVLAGSAALVRVPVRIERRNLR HHHHHHHHHHHHCCCCEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA