| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636158
Identifier: 221636158
GI number: 221636158
Start: 738620
End: 739387
Strand: Reverse
Name: 221636158
Synonym: trd_A0751
Alternate gene names: NA
Gene position: 739387-738620 (Counterclockwise)
Preceding gene: 221636159
Following gene: 221636153
Centisome position: 80.57
GC content: 68.36
Gene sequence:
>768_bases ATGACCGCATCGACACGTCGGCGCAAGGCACTCGGGACGACTGCGCTCCTCCTGGCAATGATGCTGATCGGGGGGTGGTT GAACGCGTCCTCGCACGCCCTGCTGCTCGGCCCGGTCGGGGTATCACCGCGCGTGCCGGAGGCTGACGCGCTGCGCACCG AGGCGTGGCGGCTCGTCGGGCAAGCGATTCCGAGTGAAGAGGTCGCGGTGCTCCCGTTGCCCGAGACGTGGATCCCGCCG AGGCACTTGCCCAGCCCGGCGGTCGAGGAGCCCTCGCCGGTCCGCGAACCACTCCTGGTGATGCCGCGACTGGTCGAGCC GGTGCGTATTCGGATTCCGAGCATCGGCGTCGATGCTCCGATCCAAGCGGTCGATCTCGCGCCCGACGGCAGCCTGGCGA TCTCCGACGACGGCGACACAGTGTTCTGGTATCGGGGAAGCGCCTACCCCGGTTGGCCGGGACGAGCGTTACTGGCAGGC CATCTCGACCGGGTGGAGGGTGGTTGGGCTGTCTTCGCCGGCTTGCACCGCTTGCAGCCGGGTAGTGTGGTGCTGCTCGA ACTGGCCGATGGGCGGGTGCTCCACTACACGGTGACGGGGCAAGCGCGTGTGGCGAGCACGGACCTACCGGCGGAGCTGC TCACCGGCGAGAACTCCTCGGAACTCGTCTTGATCACCTGCGCCGGCTGGTGGGATCCGCAGCGTCGCGTGTACAGCGAC AACCTTCTCGTCTTCACGCGCTTCGACGGCCTCGCCCCGCTGAGCTAG
Upstream 100 bases:
>100_bases CTCCGGTAATGGCGCCTCTCCCTCCCGTCGCAGCGGGTGCTCCGGTTTCGATCAGGGCACCCGCTGCTTTCGGTCGCAGA CGTTCCCAGCGAGGATCGTC
Downstream 100 bases:
>100_bases TCGCTCGCGGTAGCGTTGGCGTCGCTGAGTACCGTATCCAGCGCTGCGGAGAAGATCTCCAGGGTGCGCGCGATGTCGGC CTCGCTGTGGGCCAGCGAGA
Product: peptidase C60 sortase A and B
Products: NA
Alternate protein names: Secreted Protein; Lipoprotein; Sortase-Like Protein; Peptidase C; LOW QUALITY PROTEIN Secreted Protein; C60 Family Sortase A; Sortase D Type; Sortase
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVGQAIPSEEVAVLPLPETWIPP RHLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAPIQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAG HLDRVEGGWAVFAGLHRLQPGSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSD NLLVFTRFDGLAPLS
Sequences:
>Translated_255_residues MTASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVGQAIPSEEVAVLPLPETWIPP RHLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAPIQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAG HLDRVEGGWAVFAGLHRLQPGSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSD NLLVFTRFDGLAPLS >Mature_254_residues TASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVGQAIPSEEVAVLPLPETWIPPR HLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAPIQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAGH LDRVEGGWAVFAGLHRLQPGSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSDN LLVFTRFDGLAPLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27486; Mature: 27355
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00496 PII_GLNB_UMP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVG CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH QAIPSEEVAVLPLPETWIPPRHLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAP HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCC IQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAGHLDRVEGGWAVFAGLHRLQP CEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHCCC GSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSD CCEEEEEECCCEEEEEEECCCEEEECCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEECC NLLVFTRFDGLAPLS CEEEEEECCCCCCCC >Mature Secondary Structure TASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVG CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH QAIPSEEVAVLPLPETWIPPRHLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAP HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCC IQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAGHLDRVEGGWAVFAGLHRLQP CEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHCCC GSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSD CCEEEEEECCCEEEEEEECCCEEEECCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEECC NLLVFTRFDGLAPLS CEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA