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The map label for this gene is rbsB [H]

Identifier: 221635999

GI number: 221635999

Start: 583867

End: 584940

Strand: Reverse

Name: rbsB [H]

Synonym: trd_A0593

Alternate gene names: 221635999

Gene position: 584940-583867 (Counterclockwise)

Preceding gene: 221636000

Following gene: 221635998

Centisome position: 63.74

GC content: 61.55

Gene sequence:

>1074_bases
GTGTTGGTCGGTGGTGCAGCGCTGTCCCTGCTGAATGCATGTGGCGGTGCACAGGCGACGCCGACTCCGGCCCCAGCAGC
AACACCGACGCGCGCACCAGCTCCATCGCCAACTGCCGCGGCGGCTGCTTCCCCGACGGCTGCCGCCGCGACTCCGGCAG
CAGCCGCAACACCGACCGCGGCGGCTGCGGCTGGACCGGTGCCGACCGTGGCACCGGGGACGAAGATCACGATCGCAATG
GTGCCCAAACTCGTTCACCCCTTCTTCGAAGACTGCCGCAAGGGAGGCGAGCAGAAAGCGAAGGAACTCGGCGTGACGTT
CGAGTATGTCGCTCCGCAGCAAGCTGACCCAGCTCTGCAAGTGAAGATCATCGAAGATCTCATCCGCAAGAAGGTGCATG
CCATCTCGATCTCGCCCAACGAGCCAAAGTCGGTCGAGCCGGTGATCGCCGAGGGGATGAAGCAGGGCATCCTCATGATG
ACCTTCGATGCCGATTCTCCAAACAGCCAGCGCGTGATGTACATCGGCACTGACAACAAGGCTGCTGGGAAGACGATGGG
CGAAACCATGGCCAAGTTACTGAACGGCCGGGGAAAGGTCGGCATCATCACTGGTGGGCTCGGCGCGCTCAATCTGAACC
AGCGCATCGAAGGGTTCAAGGAAGGAGTCGGACCGAATATCCAGGTCGTCGACGTTCAGGCGACAGACGATGACTTGCAG
AAGGGACTGTCGGTCAGCGAGGCGATGTTGCGAGCGCATCCGGATCTCAACGGGATCGCTTGTGTCAGCGCGACCGGTGG
ACCAACGCTCGCGCAGGTCCTCAAGTCACCCGAGTTCCAAGATCGGATCGGCAAGCTGGTCATCGTGGCGTTCGATGACC
TGGAGGAAACGAAGCGCGCGATCCAGGAAGGAATCATCGCGGCGACGATGGTCCAGCGGCCGGTTCAGATGGGTGTGCTG
ACGGTCCAGTGGGCCTACGACATCCTGACTGGCAAGGCGAAGCCACCGTTCAAGAACATCGACACTGGTGTGACGGTGGT
GACGAAGGAGAACCTGAACAGCTATACGAAGTGA

Upstream 100 bases:

>100_bases
GGGCGATCAAGACACAGGACGGCATGAGTGAAGGAGGAGAGTCGTCAAGGACGATCAGCGACTGCGCAAAACGGTTACGC
GGCGACACCTGCTCCGTTCC

Downstream 100 bases:

>100_bases
CGCTCAAACGAAGGGGCCGGGGGGCTCTCCCGGCCCCTTTCCCGAAGGCAGGGGGCAGAATATGGCTGAGCCGATCTTGG
AAGCCCGCCAGATTACGAAG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLVGGAALSLLNACGGAQATPTPAPAATPTRAPAPSPTAAAAASPTAAAATPAAAATPTAAAAAGPVPTVAPGTKITIAM
VPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMM
TFDADSPNSQRVMYIGTDNKAAGKTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGVGPNIQVVDVQATDDDLQ
KGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQRPVQMGVL
TVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSYTK

Sequences:

>Translated_357_residues
MLVGGAALSLLNACGGAQATPTPAPAATPTRAPAPSPTAAAAASPTAAAATPAAAATPTAAAAAGPVPTVAPGTKITIAM
VPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMM
TFDADSPNSQRVMYIGTDNKAAGKTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGVGPNIQVVDVQATDDDLQ
KGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQRPVQMGVL
TVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSYTK
>Mature_357_residues
MLVGGAALSLLNACGGAQATPTPAPAATPTRAPAPSPTAAAAASPTAAAATPAAAATPTAAAAAGPVPTVAPGTKITIAM
VPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMM
TFDADSPNSQRVMYIGTDNKAAGKTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGVGPNIQVVDVQATDDDLQ
KGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQRPVQMGVL
TVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSYTK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=286, Percent_Identity=28.3216783216783, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1790526, Length=276, Percent_Identity=28.2608695652174, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787795, Length=188, Percent_Identity=28.1914893617021, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36990; Mature: 36990

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGGAALSLLNACGGAQATPTPAPAATPTRAPAPSPTAAAAASPTAAAATPAAAATPTA
CEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCH
AAAAGPVPTVAPGTKITIAMVPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQ
HHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCHH
VKIIEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNK
HHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEEEECCCC
AAGKTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGVGPNIQVVDVQATDDDLQ
CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
KGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRA
HCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHCCCEEEEEECCHHHHHHH
IQEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSYTK
HHHHHHHHHHHHHHHHHCEEEEEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MLVGGAALSLLNACGGAQATPTPAPAATPTRAPAPSPTAAAAASPTAAAATPAAAATPTA
CEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCH
AAAAGPVPTVAPGTKITIAMVPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQ
HHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCHH
VKIIEDLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNK
HHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEEEECCCC
AAGKTMGETMAKLLNGRGKVGIITGGLGALNLNQRIEGFKEGVGPNIQVVDVQATDDDLQ
CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
KGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRA
HCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHCCCEEEEEECCHHHHHHH
IQEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSYTK
HHHHHHHHHHHHHHHHHCEEEEEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]