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The map label for this gene is ygaK [H]

Identifier: 221635926

GI number: 221635926

Start: 512364

End: 513758

Strand: Reverse

Name: ygaK [H]

Synonym: trd_A0520

Alternate gene names: 221635926

Gene position: 513758-512364 (Counterclockwise)

Preceding gene: 221635927

Following gene: 221635924

Centisome position: 55.98

GC content: 63.44

Gene sequence:

>1395_bases
ATGTCCCACCGAAACGTGTTCCATACCTGGCACGGTGAAGAACGGGCACTCGATCCCAGTGCTCTCGATGCGTTCCGTAC
GGCTCTCCAGGGTAATGTCCGTACTCCTGGTGATGCCGGCTACGACGAGGCTCGTGCCGTCTGGAACGGGACGATCGATC
GTCACCCCGCGTTGATCGTCTCCGCCCAGACGATCGAGGACGTCCAGCAGGTGATAGCGTTCGCTCAGCAGCACGAGATA
GTACTGGCTGTGCGGGGCGGCGGTCACAGTTTCGCTGGTCACTCGACGTGCGACGGTGGAATCGTGCTCGATCTCGCTCC
GATGAGGCATCTCCGTGTCGATCCCGCTCGGCGCCTCGCGATGGCCAGCCCTGGACTCCGCTGGGCGGACCTGGACGCGG
CGACACAGCAACACGGTCTCGCAGTGACCGGAGGGCAGATTTCACACACCGGTATCGCTGGTCTCACGCTCGGCGGCGGG
ATGGGGTGGTTGGCACGGCAAGTGGGCTTGACGATCGATCACCGCGTCAGTGCCGACATCGTCACGGCTAATGGCACGCT
CCGGCGTGCAGCACCGGACGCTGACGTCGATCTCTACTGGGCGATCCGCGGTGGCGGCGGAAACTTCGGTGTTGCGACTT
CTTTCACCTTCCGGCTGCAGCCGGTCGGACCGGAGGTCTCCGTCTACCAGTTGGCTTTCCCGGTCGAAGTTGCCGCACAG
GTCTTTTCGGAAGCCGAGAAGCTTCTGGAAGCGAGCCCACCGAGTCTTTCGGCGACCTTCGCCTTCCTGACGACACCGGA
AGGCATGCCGGTCGCTGCACTGACGCTCGTGTCGACGGCATCCAGCGAGCTGACAGCGCAGAGTTTCGCACCGTTCCGCG
GTCTCGGAACTCCTGTCTTCGAGGAGACCGTACGGGTACCTTACACCGCGCTGCAACGCATGCTGGACCAGGTTGCGGCG
CCGGGGCTCCGCTACTACGGTCGCGGCAACTTCCTCGACACGCTCGATCCGCTCGTCATCGAACCGCTGGCCACTGCCTA
CGCGGAGGCACCGTCGCCGCAGAGTCTCGTCCTGTTCGTTCGCCTCGGTGGTGCAGTCACTGCCATTCCAATGGAAGCCA
CGGCGTTCGCGCATCGCAACCGCCCCTGGGCTGTGACCGCCCTGGCGATCTGGCGTGACCCGGCCGACGATGATACGAAC
CGGACTTGGATCGAACGAGCCTGGAGCGCTTTGCCTGCTCTGCCGAAGGCCGTCTACGTCAACGAACTCGGTGACGAGGG
GAACGAACGCGTGCGTGCTGCTTACGGCCCGAATTACGAGCGTTTGAGCCAACTCAAGCGACGGTACGATCCGAACAACC
TCTTCCGCCTCAATCAAAACATCCGGCCAGCTTGA

Upstream 100 bases:

>100_bases
CGGTGGGCAGGGTGTGGTCCACTCCGATGAGCCGCCCGAACGTGGGCGTGCGGAGTCGCACCGGTGGCCTAGACCAGCTG
CATCGCACAGGAGGTGCTGT

Downstream 100 bases:

>100_bases
CCCACCCTGTGCGCCCGGGCAGCCTCTTGTGCCCGGGCGCGTGCTGGTCACCCAGCGAGGGCGACGCCGAAGAGTCGCCC
GACGCCGAAGGTGATCGCCG

Product: FAD linked oxidase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSHRNVFHTWHGEERALDPSALDAFRTALQGNVRTPGDAGYDEARAVWNGTIDRHPALIVSAQTIEDVQQVIAFAQQHEI
VLAVRGGGHSFAGHSTCDGGIVLDLAPMRHLRVDPARRLAMASPGLRWADLDAATQQHGLAVTGGQISHTGIAGLTLGGG
MGWLARQVGLTIDHRVSADIVTANGTLRRAAPDADVDLYWAIRGGGGNFGVATSFTFRLQPVGPEVSVYQLAFPVEVAAQ
VFSEAEKLLEASPPSLSATFAFLTTPEGMPVAALTLVSTASSELTAQSFAPFRGLGTPVFEETVRVPYTALQRMLDQVAA
PGLRYYGRGNFLDTLDPLVIEPLATAYAEAPSPQSLVLFVRLGGAVTAIPMEATAFAHRNRPWAVTALAIWRDPADDDTN
RTWIERAWSALPALPKAVYVNELGDEGNERVRAAYGPNYERLSQLKRRYDPNNLFRLNQNIRPA

Sequences:

>Translated_464_residues
MSHRNVFHTWHGEERALDPSALDAFRTALQGNVRTPGDAGYDEARAVWNGTIDRHPALIVSAQTIEDVQQVIAFAQQHEI
VLAVRGGGHSFAGHSTCDGGIVLDLAPMRHLRVDPARRLAMASPGLRWADLDAATQQHGLAVTGGQISHTGIAGLTLGGG
MGWLARQVGLTIDHRVSADIVTANGTLRRAAPDADVDLYWAIRGGGGNFGVATSFTFRLQPVGPEVSVYQLAFPVEVAAQ
VFSEAEKLLEASPPSLSATFAFLTTPEGMPVAALTLVSTASSELTAQSFAPFRGLGTPVFEETVRVPYTALQRMLDQVAA
PGLRYYGRGNFLDTLDPLVIEPLATAYAEAPSPQSLVLFVRLGGAVTAIPMEATAFAHRNRPWAVTALAIWRDPADDDTN
RTWIERAWSALPALPKAVYVNELGDEGNERVRAAYGPNYERLSQLKRRYDPNNLFRLNQNIRPA
>Mature_463_residues
SHRNVFHTWHGEERALDPSALDAFRTALQGNVRTPGDAGYDEARAVWNGTIDRHPALIVSAQTIEDVQQVIAFAQQHEIV
LAVRGGGHSFAGHSTCDGGIVLDLAPMRHLRVDPARRLAMASPGLRWADLDAATQQHGLAVTGGQISHTGIAGLTLGGGM
GWLARQVGLTIDHRVSADIVTANGTLRRAAPDADVDLYWAIRGGGGNFGVATSFTFRLQPVGPEVSVYQLAFPVEVAAQV
FSEAEKLLEASPPSLSATFAFLTTPEGMPVAALTLVSTASSELTAQSFAPFRGLGTPVFEETVRVPYTALQRMLDQVAAP
GLRYYGRGNFLDTLDPLVIEPLATAYAEAPSPQSLVLFVRLGGAVTAIPMEATAFAHRNRPWAVTALAIWRDPADDDTNR
TWIERAWSALPALPKAVYVNELGDEGNERVRAAYGPNYERLSQLKRRYDPNNLFRLNQNIRPA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50127; Mature: 49996

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00862 OX2_COVAL_FAD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRNVFHTWHGEERALDPSALDAFRTALQGNVRTPGDAGYDEARAVWNGTIDRHPALIV
CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEE
SAQTIEDVQQVIAFAQQHEIVLAVRGGGHSFAGHSTCDGGIVLDLAPMRHLRVDPARRLA
EHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCHHCCCCHHHHHH
MASPGLRWADLDAATQQHGLAVTGGQISHTGIAGLTLGGGMGWLARQVGLTIDHRVSADI
HCCCCCEEECCCHHHHHCCEEEECCCEECCCEEEEEECCCHHHHHHHHCCEEECCCCEEE
VTANGTLRRAAPDADVDLYWAIRGGGGNFGVATSFTFRLQPVGPEVSVYQLAFPVEVAAQ
EECCCEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEECCHHHHHH
VFSEAEKLLEASPPSLSATFAFLTTPEGMPVAALTLVSTASSELTAQSFAPFRGLGTPVF
HHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEHEEHHHCCCHHHHHHCCCCCCCCCHHH
EETVRVPYTALQRMLDQVAAPGLRYYGRGNFLDTLDPLVIEPLATAYAEAPSPQSLVLFV
HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEE
RLGGAVTAIPMEATAFAHRNRPWAVTALAIWRDPADDDTNRTWIERAWSALPALPKAVYV
EECCEEEEECCHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHH
NELGDEGNERVRAAYGPNYERLSQLKRRYDPNNLFRLNQNIRPA
HHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SHRNVFHTWHGEERALDPSALDAFRTALQGNVRTPGDAGYDEARAVWNGTIDRHPALIV
CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEE
SAQTIEDVQQVIAFAQQHEIVLAVRGGGHSFAGHSTCDGGIVLDLAPMRHLRVDPARRLA
EHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCHHCCCCHHHHHH
MASPGLRWADLDAATQQHGLAVTGGQISHTGIAGLTLGGGMGWLARQVGLTIDHRVSADI
HCCCCCEEECCCHHHHHCCEEEECCCEECCCEEEEEECCCHHHHHHHHCCEEECCCCEEE
VTANGTLRRAAPDADVDLYWAIRGGGGNFGVATSFTFRLQPVGPEVSVYQLAFPVEVAAQ
EECCCEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEECCHHHHHH
VFSEAEKLLEASPPSLSATFAFLTTPEGMPVAALTLVSTASSELTAQSFAPFRGLGTPVF
HHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEHEEHHHCCCHHHHHHCCCCCCCCCHHH
EETVRVPYTALQRMLDQVAAPGLRYYGRGNFLDTLDPLVIEPLATAYAEAPSPQSLVLFV
HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEE
RLGGAVTAIPMEATAFAHRNRPWAVTALAIWRDPADDDTNRTWIERAWSALPALPKAVYV
EECCEEEEECCHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHH
NELGDEGNERVRAAYGPNYERLSQLKRRYDPNNLFRLNQNIRPA
HHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377 [H]