| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221635908
Identifier: 221635908
GI number: 221635908
Start: 491945
End: 493201
Strand: Reverse
Name: 221635908
Synonym: trd_A0502
Alternate gene names: NA
Gene position: 493201-491945 (Counterclockwise)
Preceding gene: 221635914
Following gene: 221635905
Centisome position: 53.74
GC content: 66.19
Gene sequence:
>1257_bases GTGTGGAACGACGAACAGCGTTTCCCGTCAGGAGAGGAACGTCCGATGCTCGATGCTGTTCGAACCTCAGCCGATCGATC CACCCGCCCGCTCGGGCTCGTTCCGACAGCTGCGCTCCTCGTGGTCGTCGTCACGCTGGCGGCAGGACTCCTCTTCGCCG CCTTGCCGCGCTTCTCCGCTGGATCGGCCGACCTCTCGCAGGGAGTCAAGACGACCATCATCGCCCAAACCGGTTCTGAG CTCCTCGCGCTCGATCCGCGGAGCGGCCAGGTCCTCACCCAGCGGCCGGGAGCGGCTGCTGTCATCGCGGTCAGCGCTGA CACGCGCACCGTTCTGGCCCAAATCGGTGAGGCCATCCACGTCTATCGCCTGCCCGATTGGGAGGAACGGTTCCGCATAC CGCTCACGACCGAGATCACGCCGGTCGCCGCGCTCGCTCGCCAGTTCCCCGACTTCGGTGCGGAACCACCGCGTCTTTTC CAGGCCGCAGTCGCTCCCGACGGTCGCTTCGCGGTACTCGGTTTCACCTCCTACGGGACCAAGCCGGACGCACGCTTCTT CGACACGCTCCCCTGGGTCATCTGGGTAGCTGGCCTCGACCTGAAGACCGGGAGATGGTCGGACTGGGCCTTCCCTGTTC CAGGCGCGCAGAATCTTACGCTCCTCGCGACCTCAGAAAGTCTCCTGGTGCTGAGCCACGATAATCAGCTGTCGCGAGGA GGGCACATCGGCACCGTTTATCACCTCGACCCGGCTTCGGGGGCACTGCGAGCCCGCGCGACGCTCGTCCCGGAGATTCC CGGCGCCGCCCTGATCGCCGGCACCGAGGCTGCCCGTGCGCCCGGGATCGCCGGAGCACGCATCAGCGATGCGCGTCTCG TCGTCGTGACCGAACAGCTGGAGGTTTTCGTCCTCGACCCAGTGACCCTCCGTCTCGTCGAGCACCATCGACCGCTCAGC GAGAACATCCTCGCGCGCGAGACCCTCATCCTCCCGAACCGCGTCGTCGCGCTCACCCACACCGATGAACTCCTCGTCGT CGATCGGAACCGGCACGCAGTCGTCGCACGCCAGCCGGTCGAGGCCGACGAACTGGTCGCCTTCGATCCTGAAGACAACG CTGCCCTGGTGATGACCTGGCAAGACCGGGGAGCGTGCCTCGAGCGTATCGAGTCGAGCGGCGACCGCCACACGCTTCGC TGTGGTCTCGATACGAACCCGTATGAGCCACGCTATGCTGTCGGAGGTCTCCCGTGA
Upstream 100 bases:
>100_bases TGACCCTGCGCGGTCGACCTGGCTATCGCTCTACCGACTGCGGTCGTCTCGCCTCGTCGGCTCGGTTGTCTGCAGATCCA CCGGTCAGCCGTCTTAAAGA
Downstream 100 bases:
>100_bases TTCCCGTTACGCGCCGCTCCTGGCTCCGACGCATCGCTGCCGCCCTCGCTGGCATCGGTACACTGCTCGTCGATGCTGAG CCACGTCTCGCGCGATCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR CGLDTNPYEPRYAVGGLP
Sequences:
>Translated_418_residues MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR CGLDTNPYEPRYAVGGLP >Mature_418_residues MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR CGLDTNPYEPRYAVGGLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45152; Mature: 45152
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSA CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC GSADLSQGVKTTIIAQTGSELLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIH CCHHHHCCCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEEEEECCHHHHHHHHCCEEE VYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLFQAAVAPDGRFAVLGFTSYGT EEECCCHHHHEECCEECCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCEEEEEEECCCC KPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG CCCCHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCC GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQL CCEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCHHCCCCCCCCEECCCEEEEEEECE EVFVLDPVTLRLVEHHRPLSENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPV EEEEECCHHEEHHHHCCCHHHHHHHHHEEECCCEEEEEEECCEEEEEECCCEEEEEECCC EADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLRCGLDTNPYEPRYAVGGLP CCCCEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCC >Mature Secondary Structure MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSA CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC GSADLSQGVKTTIIAQTGSELLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIH CCHHHHCCCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEEEEECCHHHHHHHHCCEEE VYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLFQAAVAPDGRFAVLGFTSYGT EEECCCHHHHEECCEECCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCEEEEEEECCCC KPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG CCCCHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCC GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQL CCEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCHHCCCCCCCCEECCCEEEEEEECE EVFVLDPVTLRLVEHHRPLSENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPV EEEEECCHHEEHHHHCCCHHHHHHHHHEEECCCEEEEEEECCEEEEEECCCEEEEEECCC EADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLRCGLDTNPYEPRYAVGGLP CCCCEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA