The gene/protein map for NC_011961 is currently unavailable.
Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221635908

Identifier: 221635908

GI number: 221635908

Start: 491945

End: 493201

Strand: Reverse

Name: 221635908

Synonym: trd_A0502

Alternate gene names: NA

Gene position: 493201-491945 (Counterclockwise)

Preceding gene: 221635914

Following gene: 221635905

Centisome position: 53.74

GC content: 66.19

Gene sequence:

>1257_bases
GTGTGGAACGACGAACAGCGTTTCCCGTCAGGAGAGGAACGTCCGATGCTCGATGCTGTTCGAACCTCAGCCGATCGATC
CACCCGCCCGCTCGGGCTCGTTCCGACAGCTGCGCTCCTCGTGGTCGTCGTCACGCTGGCGGCAGGACTCCTCTTCGCCG
CCTTGCCGCGCTTCTCCGCTGGATCGGCCGACCTCTCGCAGGGAGTCAAGACGACCATCATCGCCCAAACCGGTTCTGAG
CTCCTCGCGCTCGATCCGCGGAGCGGCCAGGTCCTCACCCAGCGGCCGGGAGCGGCTGCTGTCATCGCGGTCAGCGCTGA
CACGCGCACCGTTCTGGCCCAAATCGGTGAGGCCATCCACGTCTATCGCCTGCCCGATTGGGAGGAACGGTTCCGCATAC
CGCTCACGACCGAGATCACGCCGGTCGCCGCGCTCGCTCGCCAGTTCCCCGACTTCGGTGCGGAACCACCGCGTCTTTTC
CAGGCCGCAGTCGCTCCCGACGGTCGCTTCGCGGTACTCGGTTTCACCTCCTACGGGACCAAGCCGGACGCACGCTTCTT
CGACACGCTCCCCTGGGTCATCTGGGTAGCTGGCCTCGACCTGAAGACCGGGAGATGGTCGGACTGGGCCTTCCCTGTTC
CAGGCGCGCAGAATCTTACGCTCCTCGCGACCTCAGAAAGTCTCCTGGTGCTGAGCCACGATAATCAGCTGTCGCGAGGA
GGGCACATCGGCACCGTTTATCACCTCGACCCGGCTTCGGGGGCACTGCGAGCCCGCGCGACGCTCGTCCCGGAGATTCC
CGGCGCCGCCCTGATCGCCGGCACCGAGGCTGCCCGTGCGCCCGGGATCGCCGGAGCACGCATCAGCGATGCGCGTCTCG
TCGTCGTGACCGAACAGCTGGAGGTTTTCGTCCTCGACCCAGTGACCCTCCGTCTCGTCGAGCACCATCGACCGCTCAGC
GAGAACATCCTCGCGCGCGAGACCCTCATCCTCCCGAACCGCGTCGTCGCGCTCACCCACACCGATGAACTCCTCGTCGT
CGATCGGAACCGGCACGCAGTCGTCGCACGCCAGCCGGTCGAGGCCGACGAACTGGTCGCCTTCGATCCTGAAGACAACG
CTGCCCTGGTGATGACCTGGCAAGACCGGGGAGCGTGCCTCGAGCGTATCGAGTCGAGCGGCGACCGCCACACGCTTCGC
TGTGGTCTCGATACGAACCCGTATGAGCCACGCTATGCTGTCGGAGGTCTCCCGTGA

Upstream 100 bases:

>100_bases
TGACCCTGCGCGGTCGACCTGGCTATCGCTCTACCGACTGCGGTCGTCTCGCCTCGTCGGCTCGGTTGTCTGCAGATCCA
CCGGTCAGCCGTCTTAAAGA

Downstream 100 bases:

>100_bases
TTCCCGTTACGCGCCGCTCCTGGCTCCGACGCATCGCTGCCGCCCTCGCTGGCATCGGTACACTGCTCGTCGATGCTGAG
CCACGTCTCGCGCGATCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE
LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF
QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG
GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS
ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR
CGLDTNPYEPRYAVGGLP

Sequences:

>Translated_418_residues
MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE
LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF
QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG
GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS
ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR
CGLDTNPYEPRYAVGGLP
>Mature_418_residues
MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSAGSADLSQGVKTTIIAQTGSE
LLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIHVYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLF
QAAVAPDGRFAVLGFTSYGTKPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG
GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQLEVFVLDPVTLRLVEHHRPLS
ENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPVEADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLR
CGLDTNPYEPRYAVGGLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45152; Mature: 45152

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSA
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GSADLSQGVKTTIIAQTGSELLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIH
CCHHHHCCCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEEEEECCHHHHHHHHCCEEE
VYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLFQAAVAPDGRFAVLGFTSYGT
EEECCCHHHHEECCEECCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCEEEEEEECCCC
KPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG
CCCCHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCC
GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQL
CCEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCHHCCCCCCCCEECCCEEEEEEECE
EVFVLDPVTLRLVEHHRPLSENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPV
EEEEECCHHEEHHHHCCCHHHHHHHHHEEECCCEEEEEEECCEEEEEECCCEEEEEECCC
EADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLRCGLDTNPYEPRYAVGGLP
CCCCEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCC
>Mature Secondary Structure
MWNDEQRFPSGEERPMLDAVRTSADRSTRPLGLVPTAALLVVVVTLAAGLLFAALPRFSA
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GSADLSQGVKTTIIAQTGSELLALDPRSGQVLTQRPGAAAVIAVSADTRTVLAQIGEAIH
CCHHHHCCCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEEEEECCHHHHHHHHCCEEE
VYRLPDWEERFRIPLTTEITPVAALARQFPDFGAEPPRLFQAAVAPDGRFAVLGFTSYGT
EEECCCHHHHEECCEECCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCEEEEEEECCCC
KPDARFFDTLPWVIWVAGLDLKTGRWSDWAFPVPGAQNLTLLATSESLLVLSHDNQLSRG
CCCCHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCC
GHIGTVYHLDPASGALRARATLVPEIPGAALIAGTEAARAPGIAGARISDARLVVVTEQL
CCEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCHHCCCCCCCCEECCCEEEEEEECE
EVFVLDPVTLRLVEHHRPLSENILARETLILPNRVVALTHTDELLVVDRNRHAVVARQPV
EEEEECCHHEEHHHHCCCHHHHHHHHHEEECCCEEEEEEECCEEEEEECCCEEEEEECCC
EADELVAFDPEDNAALVMTWQDRGACLERIESSGDRHTLRCGLDTNPYEPRYAVGGLP
CCCCEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA