| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221635850
Identifier: 221635850
GI number: 221635850
Start: 428878
End: 430839
Strand: Reverse
Name: 221635850
Synonym: trd_A0444
Alternate gene names: NA
Gene position: 430839-428878 (Counterclockwise)
Preceding gene: 221635854
Following gene: 221635843
Centisome position: 46.95
GC content: 64.88
Gene sequence:
>1962_bases ATGGCACGTCGTGCCGTCTTACCGCTCTCCCCGGCGCTCGCTGCCTGGCTCGCCAAGTGCCAGTGGGCCTGTGGAAGCAA ATGTTTCACCGAACCCGTGAACCCCAGCGAGAATCCGACTTTCGAGAACGTCCTCGCCCAACGCTTGAGTCGCCGAGATC TCCTCGGTGGGGCGGCAGCTGTCGCGCTGGTACTCGCCGTGGGCCGTCACGAGTCGGCTGAGGCGAGTCAGCGCGGCCGT CTCACCTTCCGCCCGATCACGCTCAACACCCGCGACGAAGTAACCGTACCGGAGGGGTACGCGAGTGGCGTCGTTATTCG CTGGGGCGATCCCCTGCAGAGCTGGGGCCCGGAGTTCCGTTTCGGGGAACAATCTCCAGAAAGGCAAGCGCAGCAATTCG GCTACAACTGCGACTTCGTCGGTCTCTTCCTGCTCCCCGGCGGGGCTGCGTCCGGTTCTCGTGGCCTTCTCGCCGTGAAC CACGAGTACACGAACCCCGAACTCATGTTCCCCGGCTATCGCGAAGGTGACCCTGAGGCCTGGCAGGTCGCCGTCGAATT GGAAGCCCACGGAGTCACCATCGTCGAGGTTCTCCAGCGGGGGCGCGGACAGTGGCACTACCTGCCCGGCTCCTCCTACA ACCGGCGCATCACCGGCACTACCCGTTGCGAGCTGACCGGTCCCGCCGCTGGCTCCGATTGGATGAAGACGAGCACCGAC AGCACGGGAACCGTCGTCTACGGCACCCTCAACAACTGCGCCGGTGGCAAGACCCCGTGGGGCACACTCCTGACCTGCGA GGAGAACTTCCACCAGTACTTCGGTAACTTGTCCGCCCTCTCCTCCACCGATCCGCGCTACACCGTTCACCAGCGGTACG GCATCCCAAGCGGTGCTTCCGAGCGCCGCTGGGAACGCTTCGACCGGCGCTTCGATGTCAGCAAGGAGCCGAACGAGCCG TTCCGTTTCGGCTGGGTAGTCGAGATCGATCCTTACGATCCGACCTTCGTCCCCAAGAAGCGCACCGCGCTTGGCCGCTT CAAGCACGAGGCAGCGACAGTCGTCATCGCCCGCGACGGGCGGGCCGTTGTGTACTCCGGTGACGACGAGCGCTTCGAAT ACATCTACAAGTTCGTCAGCGAGGGTCGCTACAACCCACGGGACCGGCGAGCCAACTTCTCACTGCTCGACTCCGGTACG CTCTACGTCGCGCGGTTCAATGCCGACGGCACCGGCGAGTGGCTACCGCTCGTCCACGGCCAAGGACCCTTGACTGAAGC TAACGGTTTCCGGTCCCAAGCCGACGTGCTCGTCAACACCCGCCGGGCTGCCGACCTGCTCGGTGCAACCAAGATGGATC GGCCGGAGGACATCGAGACCAATCCCGTCAACGGCCGCGTCTACATCGTCTGCACCAACAACGCGCGCCGCAAATGGAAC CAGATCGATCCAGCCAATCCGCGCGGCGACAATCGCCACGGCCACATCATCGAACTGATCGAGAACGGTGACGCCGCTGC GACACGCTTCCGCTGGGAGATCTTCCTGCTCTGCGGCGACCCCGCGAACCCGGACGACGGGGTCTTCGCTGCCGGGTTCG ACCCGAGCCTCATCAGCCCGATCTCCTGCCCGGACAACATCACCTTCGACGCGTGGGGCAACATGTGGATCGCTACCGAC GGTCAGCCCGGCACGTTCCGCCGCAACGACGGCATCTATGCCGTTCCCACGAGCGGCAACGAGCGAGGATTCGTGCGGAT GTTCCTGAGCGGGCCTCGCGGTTGCGAAATCTGCGGTCCCGAGTTCGCGCCCGACTTCCATACCCTCTTCTGTGCCATCC AGCATCCGGGCGAAGGAGGCACGCTCTCAGCCCCGCTCTCCAGCTGGCCGGACGGCACCGTCCCGCGCCCCAGCGTCATC GTGGTCTGGAAGGACCGCGGCGATCCTCGCATCGGAAGCTGA
Upstream 100 bases:
>100_bases ACGGTCACAGGTTCTTCACCGTTCGTCCATCGAACTGTCCCAGGTGGGCGGTATACAGCGAGTGTGACGACTGAGACGGA CTCGAGAAAGGAGGATCGTT
Downstream 100 bases:
>100_bases CGTCGAGTCAGCCGGGTGGAATCGTGCAGGGCCGATTCCACCCCGGTGGGAGACTCAGTCGAGGCGGAACGGGGAGAGGC TCACCCCGTAGTCGTAGGCA
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; Phosphatase-Like Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein
Number of amino acids: Translated: 653; Mature: 652
Protein sequence:
>653_residues MARRAVLPLSPALAAWLAKCQWACGSKCFTEPVNPSENPTFENVLAQRLSRRDLLGGAAAVALVLAVGRHESAEASQRGR LTFRPITLNTRDEVTVPEGYASGVVIRWGDPLQSWGPEFRFGEQSPERQAQQFGYNCDFVGLFLLPGGAASGSRGLLAVN HEYTNPELMFPGYREGDPEAWQVAVELEAHGVTIVEVLQRGRGQWHYLPGSSYNRRITGTTRCELTGPAAGSDWMKTSTD STGTVVYGTLNNCAGGKTPWGTLLTCEENFHQYFGNLSALSSTDPRYTVHQRYGIPSGASERRWERFDRRFDVSKEPNEP FRFGWVVEIDPYDPTFVPKKRTALGRFKHEAATVVIARDGRAVVYSGDDERFEYIYKFVSEGRYNPRDRRANFSLLDSGT LYVARFNADGTGEWLPLVHGQGPLTEANGFRSQADVLVNTRRAADLLGATKMDRPEDIETNPVNGRVYIVCTNNARRKWN QIDPANPRGDNRHGHIIELIENGDAAATRFRWEIFLLCGDPANPDDGVFAAGFDPSLISPISCPDNITFDAWGNMWIATD GQPGTFRRNDGIYAVPTSGNERGFVRMFLSGPRGCEICGPEFAPDFHTLFCAIQHPGEGGTLSAPLSSWPDGTVPRPSVI VVWKDRGDPRIGS
Sequences:
>Translated_653_residues MARRAVLPLSPALAAWLAKCQWACGSKCFTEPVNPSENPTFENVLAQRLSRRDLLGGAAAVALVLAVGRHESAEASQRGR LTFRPITLNTRDEVTVPEGYASGVVIRWGDPLQSWGPEFRFGEQSPERQAQQFGYNCDFVGLFLLPGGAASGSRGLLAVN HEYTNPELMFPGYREGDPEAWQVAVELEAHGVTIVEVLQRGRGQWHYLPGSSYNRRITGTTRCELTGPAAGSDWMKTSTD STGTVVYGTLNNCAGGKTPWGTLLTCEENFHQYFGNLSALSSTDPRYTVHQRYGIPSGASERRWERFDRRFDVSKEPNEP FRFGWVVEIDPYDPTFVPKKRTALGRFKHEAATVVIARDGRAVVYSGDDERFEYIYKFVSEGRYNPRDRRANFSLLDSGT LYVARFNADGTGEWLPLVHGQGPLTEANGFRSQADVLVNTRRAADLLGATKMDRPEDIETNPVNGRVYIVCTNNARRKWN QIDPANPRGDNRHGHIIELIENGDAAATRFRWEIFLLCGDPANPDDGVFAAGFDPSLISPISCPDNITFDAWGNMWIATD GQPGTFRRNDGIYAVPTSGNERGFVRMFLSGPRGCEICGPEFAPDFHTLFCAIQHPGEGGTLSAPLSSWPDGTVPRPSVI VVWKDRGDPRIGS >Mature_652_residues ARRAVLPLSPALAAWLAKCQWACGSKCFTEPVNPSENPTFENVLAQRLSRRDLLGGAAAVALVLAVGRHESAEASQRGRL TFRPITLNTRDEVTVPEGYASGVVIRWGDPLQSWGPEFRFGEQSPERQAQQFGYNCDFVGLFLLPGGAASGSRGLLAVNH EYTNPELMFPGYREGDPEAWQVAVELEAHGVTIVEVLQRGRGQWHYLPGSSYNRRITGTTRCELTGPAAGSDWMKTSTDS TGTVVYGTLNNCAGGKTPWGTLLTCEENFHQYFGNLSALSSTDPRYTVHQRYGIPSGASERRWERFDRRFDVSKEPNEPF RFGWVVEIDPYDPTFVPKKRTALGRFKHEAATVVIARDGRAVVYSGDDERFEYIYKFVSEGRYNPRDRRANFSLLDSGTL YVARFNADGTGEWLPLVHGQGPLTEANGFRSQADVLVNTRRAADLLGATKMDRPEDIETNPVNGRVYIVCTNNARRKWNQ IDPANPRGDNRHGHIIELIENGDAAATRFRWEIFLLCGDPANPDDGVFAAGFDPSLISPISCPDNITFDAWGNMWIATDG QPGTFRRNDGIYAVPTSGNERGFVRMFLSGPRGCEICGPEFAPDFHTLFCAIQHPGEGGTLSAPLSSWPDGTVPRPSVIV VWKDRGDPRIGS
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72205; Mature: 72074
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRAVLPLSPALAAWLAKCQWACGSKCFTEPVNPSENPTFENVLAQRLSRRDLLGGAAA CCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH VALVLAVGRHESAEASQRGRLTFRPITLNTRDEVTVPEGYASGVVIRWGDPLQSWGPEFR HHHHHHHCCCCCCCHHHCCCEEEEEEEECCCCCEECCCCCCCCEEEEECCCHHHCCCCCC FGEQSPERQAQQFGYNCDFVGLFLLPGGAASGSRGLLAVNHEYTNPELMFPGYREGDPEA CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCE WQVAVELEAHGVTIVEVLQRGRGQWHYLPGSSYNRRITGTTRCELTGPAAGSDWMKTSTD EEEEEEEECCCCHHHHHHHHCCCCEEECCCCCCCEEECCCEEEEEECCCCCCCCEECCCC STGTVVYGTLNNCAGGKTPWGTLLTCEENFHQYFGNLSALSSTDPRYTVHQRYGIPSGAS CCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCC ERRWERFDRRFDVSKEPNEPFRFGWVVEIDPYDPTFVPKKRTALGRFKHEAATVVIARDG HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEEECC RAVVYSGDDERFEYIYKFVSEGRYNPRDRRANFSLLDSGTLYVARFNADGTGEWLPLVHG CEEEECCCCHHHHHHHHHHHCCCCCCHHCCCCEEEEECCEEEEEEECCCCCCCEEEEEEC QGPLTEANGFRSQADVLVNTRRAADLLGATKMDRPEDIETNPVNGRVYIVCTNNARRKWN CCCCCCCCCCCCCCHHEEECHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCC QIDPANPRGDNRHGHIIELIENGDAAATRFRWEIFLLCGDPANPDDGVFAAGFDPSLISP CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEECCCCHHCCC ISCPDNITFDAWGNMWIATDGQPGTFRRNDGIYAVPTSGNERGFVRMFLSGPRGCEICGP CCCCCCCEEECCCCEEEEECCCCCCEEECCCEEEEECCCCCCCEEEEEECCCCCCCCCCC EFAPDFHTLFCAIQHPGEGGTLSAPLSSWPDGTVPRPSVIVVWKDRGDPRIGS CCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure ARRAVLPLSPALAAWLAKCQWACGSKCFTEPVNPSENPTFENVLAQRLSRRDLLGGAAA CCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH VALVLAVGRHESAEASQRGRLTFRPITLNTRDEVTVPEGYASGVVIRWGDPLQSWGPEFR HHHHHHHCCCCCCCHHHCCCEEEEEEEECCCCCEECCCCCCCCEEEEECCCHHHCCCCCC FGEQSPERQAQQFGYNCDFVGLFLLPGGAASGSRGLLAVNHEYTNPELMFPGYREGDPEA CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCE WQVAVELEAHGVTIVEVLQRGRGQWHYLPGSSYNRRITGTTRCELTGPAAGSDWMKTSTD EEEEEEEECCCCHHHHHHHHCCCCEEECCCCCCCEEECCCEEEEEECCCCCCCCEECCCC STGTVVYGTLNNCAGGKTPWGTLLTCEENFHQYFGNLSALSSTDPRYTVHQRYGIPSGAS CCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCC ERRWERFDRRFDVSKEPNEPFRFGWVVEIDPYDPTFVPKKRTALGRFKHEAATVVIARDG HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEEECC RAVVYSGDDERFEYIYKFVSEGRYNPRDRRANFSLLDSGTLYVARFNADGTGEWLPLVHG CEEEECCCCHHHHHHHHHHHCCCCCCHHCCCCEEEEECCEEEEEEECCCCCCCEEEEEEC QGPLTEANGFRSQADVLVNTRRAADLLGATKMDRPEDIETNPVNGRVYIVCTNNARRKWN CCCCCCCCCCCCCCHHEEECHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCC QIDPANPRGDNRHGHIIELIENGDAAATRFRWEIFLLCGDPANPDDGVFAAGFDPSLISP CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEECCCCHHCCC ISCPDNITFDAWGNMWIATDGQPGTFRRNDGIYAVPTSGNERGFVRMFLSGPRGCEICGP CCCCCCCEEECCCCEEEEECCCCCCEEECCCEEEEECCCCCCCEEEEEECCCCCCCCCCC EFAPDFHTLFCAIQHPGEGGTLSAPLSSWPDGTVPRPSVIVVWKDRGDPRIGS CCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA