Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 221635760

GI number: 221635760

Start: 342975

End: 344048

Strand: Reverse

Name: ybhS [H]

Synonym: trd_A0354

Alternate gene names: 221635760

Gene position: 344048-342975 (Counterclockwise)

Preceding gene: 221635761

Following gene: 221635759

Centisome position: 37.49

GC content: 63.97

Gene sequence:

>1074_bases
ATGAGCTGGCAGCGCGTCCTGGCCATCTCGCTCCGCATCATCCGGCAGATTCGTCGCGACCGCCGCTCACTCGCACTCAT
CTTCCTCGCCCCGCTCGTCATTCTCGCGCTCCTCGGCTACGTCTACCGTGGCAGCGCTCGAACTCCCTCGATCGCGCTGA
GCCCGCCGGACACACCGGGAGGAGAGGCGATCGCTCGCGAACTCGCCACTTTCCCCGTGCGTGTCGAACCGATGGCACCC
GATGAGGCGATCGCCCGCGTCCGCGCTGGCCGGATCGCTGGTGCCGTCTTTCTCGAGTCGAGTGCTCAAGGGCCGACCGC
GCGTCTCGTCCTCGATGGTTCCCAACCCGGACAAGCGCGCCAAGTGAGTGCGATCGTCAGCCAAGCACTCGTGCAGGCAG
CGCTGCGGGCGACTGGCGGTGGGAGTAGCCAGCTCCATCTCCGCATCGACTACGTGACCGGGAGTCCCGTTTTCGACGAG
CTCGACACGTTCGCGCCGGTCTTCATCGGCTTTTTCGCCTTTTTCTTCGTTTTCCTGCTCACGTCGGTCTCCTTCCTCCG
CGAACGTCTACACGGAAGCATCGAGCGACTCATCGTCTCCCCGCTCGACCGCGCGGAGATCGTGCTCGGCTACATGCTCG
GGTTCGCCTTTTACGCACTCATCCAGTCGATCCTGACCGTTCTCTTCACGGTGTACGTCTTGCGTGTCCACACCGTCGGC
GCGCTCTGGCTGGTCATCGTTCTGACCGTGCTCCTCACGCTCGGTGCGGTCAATCTCGGTATCTTCCTCTCGACCTTCGC
TCGCACGGAGCTTCAGGTCGTCCAGTTCATCCCGCTCGTCATCTCGCTGCAGGGGCTCCTGTCCGGGATCATCTGGCCCG
TTACCAGCTTGCCGCGTCCACTCCAGTGGGTAGCTCGCGTGCTCCCGCTCACTTGGGCAAACGATGCCCTACGCTCTGTC
ATGCTGCGCGGACACGGGCTCGACGATCTTCTCCCTCACCTCGCCTTCCTCACCGGTTTCGCCCTTCTGATGCTCGTTCT
GGCCATGACCACGCTGCGACGCGAGGTCGCCTGA

Upstream 100 bases:

>100_bases
ACACGCCAGCTGCCCTGCGGGCAGCGACCGGCCAGGAGTCACTGGAAGACGCCTTCCTCGTTCTGGCCGGCCAGCCGATC
CTTCCCGTGGAGCCGGCGCG

Downstream 100 bases:

>100_bases
GCCATGCACACGCCGTCGCCCTCTATCCGGTTAGCACTCGGCTCGAAGCAACCCGCGAAACGCGCAGCGGTTCAGGAGAT
CGCACCCCTTTTCTGGTCGC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSWQRVLAISLRIIRQIRRDRRSLALIFLAPLVILALLGYVYRGSARTPSIALSPPDTPGGEAIARELATFPVRVEPMAP
DEAIARVRAGRIAGAVFLESSAQGPTARLVLDGSQPGQARQVSAIVSQALVQAALRATGGGSSQLHLRIDYVTGSPVFDE
LDTFAPVFIGFFAFFFVFLLTSVSFLRERLHGSIERLIVSPLDRAEIVLGYMLGFAFYALIQSILTVLFTVYVLRVHTVG
ALWLVIVLTVLLTLGAVNLGIFLSTFARTELQVVQFIPLVISLQGLLSGIIWPVTSLPRPLQWVARVLPLTWANDALRSV
MLRGHGLDDLLPHLAFLTGFALLMLVLAMTTLRREVA

Sequences:

>Translated_357_residues
MSWQRVLAISLRIIRQIRRDRRSLALIFLAPLVILALLGYVYRGSARTPSIALSPPDTPGGEAIARELATFPVRVEPMAP
DEAIARVRAGRIAGAVFLESSAQGPTARLVLDGSQPGQARQVSAIVSQALVQAALRATGGGSSQLHLRIDYVTGSPVFDE
LDTFAPVFIGFFAFFFVFLLTSVSFLRERLHGSIERLIVSPLDRAEIVLGYMLGFAFYALIQSILTVLFTVYVLRVHTVG
ALWLVIVLTVLLTLGAVNLGIFLSTFARTELQVVQFIPLVISLQGLLSGIIWPVTSLPRPLQWVARVLPLTWANDALRSV
MLRGHGLDDLLPHLAFLTGFALLMLVLAMTTLRREVA
>Mature_356_residues
SWQRVLAISLRIIRQIRRDRRSLALIFLAPLVILALLGYVYRGSARTPSIALSPPDTPGGEAIARELATFPVRVEPMAPD
EAIARVRAGRIAGAVFLESSAQGPTARLVLDGSQPGQARQVSAIVSQALVQAALRATGGGSSQLHLRIDYVTGSPVFDEL
DTFAPVFIGFFAFFFVFLLTSVSFLRERLHGSIERLIVSPLDRAEIVLGYMLGFAFYALIQSILTVLFTVYVLRVHTVGA
LWLVIVLTVLLTLGAVNLGIFLSTFARTELQVVQFIPLVISLQGLLSGIIWPVTSLPRPLQWVARVLPLTWANDALRSVM
LRGHGLDDLLPHLAFLTGFALLMLVLAMTTLRREVA

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=347, Percent_Identity=24.4956772334294, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI48994943, Length=333, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787010, Length=228, Percent_Identity=26.7543859649123, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI226510979, Length=384, Percent_Identity=25.2604166666667, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650855, Length=312, Percent_Identity=27.2435897435897, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI85725262, Length=196, Percent_Identity=29.0816326530612, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650853, Length=309, Percent_Identity=26.8608414239482, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI85725260, Length=314, Percent_Identity=25.796178343949, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24582014, Length=213, Percent_Identity=25.8215962441315, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582012, Length=213, Percent_Identity=25.8215962441315, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 39045; Mature: 38914

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWQRVLAISLRIIRQIRRDRRSLALIFLAPLVILALLGYVYRGSARTPSIALSPPDTPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
GEAIARELATFPVRVEPMAPDEAIARVRAGRIAGAVFLESSAQGPTARLVLDGSQPGQAR
HHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHH
QVSAIVSQALVQAALRATGGGSSQLHLRIDYVTGSPVFDELDTFAPVFIGFFAFFFVFLL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TSVSFLRERLHGSIERLIVSPLDRAEIVLGYMLGFAFYALIQSILTVLFTVYVLRVHTVG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWLVIVLTVLLTLGAVNLGIFLSTFARTELQVVQFIPLVISLQGLLSGIIWPVTSLPRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LQWVARVLPLTWANDALRSVMLRGHGLDDLLPHLAFLTGFALLMLVLAMTTLRREVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SWQRVLAISLRIIRQIRRDRRSLALIFLAPLVILALLGYVYRGSARTPSIALSPPDTPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
GEAIARELATFPVRVEPMAPDEAIARVRAGRIAGAVFLESSAQGPTARLVLDGSQPGQAR
HHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHH
QVSAIVSQALVQAALRATGGGSSQLHLRIDYVTGSPVFDELDTFAPVFIGFFAFFFVFLL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TSVSFLRERLHGSIERLIVSPLDRAEIVLGYMLGFAFYALIQSILTVLFTVYVLRVHTVG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWLVIVLTVLLTLGAVNLGIFLSTFARTELQVVQFIPLVISLQGLLSGIIWPVTSLPRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LQWVARVLPLTWANDALRSVMLRGHGLDDLLPHLAFLTGFALLMLVLAMTTLRREVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]