Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

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The map label for this gene is yjjX [C]

Identifier: 221635759

GI number: 221635759

Start: 342390

End: 342971

Strand: Reverse

Name: yjjX [C]

Synonym: trd_A0352

Alternate gene names: 221635759

Gene position: 342971-342390 (Counterclockwise)

Preceding gene: 221635760

Following gene: 221635750

Centisome position: 37.37

GC content: 68.56

Gene sequence:

>582_bases
ATGCACACGCCGTCGCCCTCTATCCGGTTAGCACTCGGCTCGAAGCAACCCGCGAAACGCGCAGCGGTTCAGGAGATCGC
ACCCCTTTTCTGGTCGCGTTGGGAGTTGCACTGCCTCAGCGTGCCGAGCGGTGTGCGGGCCCAACCGCTCAGCGACGAGG
AGACGGTGGCTGGAGCGCTCGCGCGCGCACGAGTCGTTCGCGACAGCGCAGATGCCGACTACGGCATCGGGCTCGAATCG
GGTGTGGCCGCTGGCCCGCTGGGGCGCCTCTACGCCGTCAGTTGGGCAGTCGTCGTCGACCGCGACGGCTGCGTGGGCAT
CGGGGGCGCGGAGCGATTCGCTCTTCCACCGGCGGTCGCCGAGCGCGTGCTGCATGGGGAAGAACTCGCCAGCGCCCTCC
GCGCGCTCGGTATGACCTCGATGCCCAGTGAAGGTGGCACTGTCGCCCTCCTTACCGGAGGGCGACGCCAGCGCCGGGAA
CTCTTCGCCATCGCCCTCTTGCACGCACTCTGCGATCTCGAGCGCCAGCGTGGTCGTCCGCTTCAGTTCGCTCGCTCGAG
CGTCGCTCCTGGTGGCACATGA

Upstream 100 bases:

>100_bases
GCTCGACGATCTTCTCCCTCACCTCGCCTTCCTCACCGGTTTCGCCCTTCTGATGCTCGTTCTGGCCATGACCACGCTGC
GACGCGAGGTCGCCTGAGCC

Downstream 100 bases:

>100_bases
TCGGCTAATTCACGGATCACCGCATCCACGTCGCTTTCCGGCGGGAGACGCAGGATGAGCCGAACAGCCATGCTCGCTGG
CCGAGGAGCCGCTGCGCGCG

Product: NTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES
GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE
LFAIALLHALCDLERQRGRPLQFARSSVAPGGT

Sequences:

>Translated_193_residues
MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES
GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE
LFAIALLHALCDLERQRGRPLQFARSSVAPGGT
>Mature_193_residues
MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES
GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE
LFAIALLHALCDLERQRGRPLQFARSSVAPGGT

Specific function: Unknown

COG id: COG1986

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0244 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002786 [H]

Pfam domain/function: PF01931 DUF84 [H]

EC number: NA

Molecular weight: Translated: 20340; Mature: 20340

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGAL
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH
ARARVVRDSADADYGIGLESGVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVA
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEEECCCCEECCCCCHHCCCHHHH
ERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRELFAIALLHALCDLERQRGRP
HHHHCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
LQFARSSVAPGGT
HHHHHHCCCCCCC
>Mature Secondary Structure
MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGAL
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH
ARARVVRDSADADYGIGLESGVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVA
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEEECCCCEECCCCCHHCCCHHHH
ERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRELFAIALLHALCDLERQRGRP
HHHHCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
LQFARSSVAPGGT
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA