| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is yjjX [C]
Identifier: 221635759
GI number: 221635759
Start: 342390
End: 342971
Strand: Reverse
Name: yjjX [C]
Synonym: trd_A0352
Alternate gene names: 221635759
Gene position: 342971-342390 (Counterclockwise)
Preceding gene: 221635760
Following gene: 221635750
Centisome position: 37.37
GC content: 68.56
Gene sequence:
>582_bases ATGCACACGCCGTCGCCCTCTATCCGGTTAGCACTCGGCTCGAAGCAACCCGCGAAACGCGCAGCGGTTCAGGAGATCGC ACCCCTTTTCTGGTCGCGTTGGGAGTTGCACTGCCTCAGCGTGCCGAGCGGTGTGCGGGCCCAACCGCTCAGCGACGAGG AGACGGTGGCTGGAGCGCTCGCGCGCGCACGAGTCGTTCGCGACAGCGCAGATGCCGACTACGGCATCGGGCTCGAATCG GGTGTGGCCGCTGGCCCGCTGGGGCGCCTCTACGCCGTCAGTTGGGCAGTCGTCGTCGACCGCGACGGCTGCGTGGGCAT CGGGGGCGCGGAGCGATTCGCTCTTCCACCGGCGGTCGCCGAGCGCGTGCTGCATGGGGAAGAACTCGCCAGCGCCCTCC GCGCGCTCGGTATGACCTCGATGCCCAGTGAAGGTGGCACTGTCGCCCTCCTTACCGGAGGGCGACGCCAGCGCCGGGAA CTCTTCGCCATCGCCCTCTTGCACGCACTCTGCGATCTCGAGCGCCAGCGTGGTCGTCCGCTTCAGTTCGCTCGCTCGAG CGTCGCTCCTGGTGGCACATGA
Upstream 100 bases:
>100_bases GCTCGACGATCTTCTCCCTCACCTCGCCTTCCTCACCGGTTTCGCCCTTCTGATGCTCGTTCTGGCCATGACCACGCTGC GACGCGAGGTCGCCTGAGCC
Downstream 100 bases:
>100_bases TCGGCTAATTCACGGATCACCGCATCCACGTCGCTTTCCGGCGGGAGACGCAGGATGAGCCGAACAGCCATGCTCGCTGG CCGAGGAGCCGCTGCGCGCG
Product: NTPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 193
Protein sequence:
>193_residues MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE LFAIALLHALCDLERQRGRPLQFARSSVAPGGT
Sequences:
>Translated_193_residues MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE LFAIALLHALCDLERQRGRPLQFARSSVAPGGT >Mature_193_residues MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGALARARVVRDSADADYGIGLES GVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVAERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRE LFAIALLHALCDLERQRGRPLQFARSSVAPGGT
Specific function: Unknown
COG id: COG1986
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0244 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002786 [H]
Pfam domain/function: PF01931 DUF84 [H]
EC number: NA
Molecular weight: Translated: 20340; Mature: 20340
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGAL CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH ARARVVRDSADADYGIGLESGVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVA HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEEECCCCEECCCCCHHCCCHHHH ERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRELFAIALLHALCDLERQRGRP HHHHCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC LQFARSSVAPGGT HHHHHHCCCCCCC >Mature Secondary Structure MHTPSPSIRLALGSKQPAKRAAVQEIAPLFWSRWELHCLSVPSGVRAQPLSDEETVAGAL CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH ARARVVRDSADADYGIGLESGVAAGPLGRLYAVSWAVVVDRDGCVGIGGAERFALPPAVA HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEEECCCCEECCCCCHHCCCHHHH ERVLHGEELASALRALGMTSMPSEGGTVALLTGGRRQRRELFAIALLHALCDLERQRGRP HHHHCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC LQFARSSVAPGGT HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA