Click here to switch to the map view.

The map label for this gene is bedC1 [H]

Identifier: 221635747

GI number: 221635747

Start: 328265

End: 329632

Strand: Reverse

Name: bedC1 [H]

Synonym: trd_A0341

Alternate gene names: 221635747

Gene position: 329632-328265 (Counterclockwise)

Preceding gene: 221635748

Following gene: 221635746

Centisome position: 35.92

GC content: 58.63

Gene sequence:

>1368_bases
ATGACGACGATCCCGGAGTATCTCGTCAAAATGCGGGAGACCCTCCCCAAGGGGCGTATACCGGCCAAGATCTTCAACGA
CCCGCAGGTCTACCAGCTCGAGAAGGAACGCCTCTTTTCCCGAGCCTGGGTGTTCCTCGCTCATGAGTCCGAAATTCCCC
AACCGGGTGATTATGTTCTCCGGTGGATCGCTGACCTATCGGTCATAGTGGTCCGCGACGAACACGGGCAGATCCGTGCA
TTCCGAAATGCTTGTACCCACCGGGGCAATCAAGTTTGCAAGGCCGAAATGGGCAATGCTTCCCACTTCCGCTGCTCGTA
TCACGGTTGGACTTTCAAGAACACAGGAGAACTCGTCGGTGTCCCGTACCACCGCGAAGTCTACCGCGGTCAGCTAGACA
AGAATGAATGGGGATTGCATCCTGTTCGCATCGATACCTACGCTGGTCTCATTTTCGGGACGCTCGATCCGAACGCAGAC
TCTCTCGAGACCTATCTTGGAGGTTTTCAGTTCTATCTCGACTTCTTCCTGCGTCCCGGACCAGAGGGGACCGAAGTCTA
CGCACCGCCCGAGCGTTGGGTCGCCGACACCGACTGGAAGATCTGCGCCGAGAATTTCGGTGGTGACGGCTATCATACGC
CGGTTGCGCACCAGTTCGGTTTCGCTCTCGGCTTCTATCCCTCCACCGGTCGCACGCATTTCATGGGCTTCGCTGCCCAT
ATTCCCGGGCGCGGTCACTGCATCGGCATCGGTCACACGCCAGGTCTTCCCCCGTTCCCGGGATTTCCCCCGGAGGTCGT
AGAGGGATACCAACAAGCACTGACCCCTGAGCAAATCTCCGTCTTCCGCGACGCTCGGATGGCAGTCGCAACCGTCTTCC
CCAATCTCTCGTTCCTCATCCAGCCATTCAGCCTGACACCGGGGAAGCCAGGGCTCAAGTTCTGTACCATGCGCTTGTGG
CATCCACGCGGGCCAGGCCGCATCGAAATGTGGACGTGGTGTCTCGTACCCAAGCACATCTCACCAGAACTCAAGCGGGA
GATCTACCGCGTCTACAGCCTCGCCTTCGGAGCAGCCGGTACGTTCGAGCAGGACGACTTCGAAAACTGGACGAACCTCT
CGCGGCAAAACGCCGCATTCAACGCCGATACCTTCGAGCTCGCCTATCTCCAGGGATTGGACTGGGAACCGCTGTCCGAC
TTTCCTGGCCCAGGCTACGCATTTACGCCATACGTGACCGAGATCGGCTTCCGTAACCTCTGGGGTACCTGGCTGAATTA
TCTCCTCACTCCGCCAGGGGAGCGCGTCGATCCGACGAAGGTGCCACCAGCGTTCTACCCTACCAAGCACGCGAGCGCAG
CTGAATGA

Upstream 100 bases:

>100_bases
CCGGTGGCAGCAGGTGCGGCAGGAAGTTGCTGAGCGTCTGAAGGCACGCGCGGCGACCACCGCGTAGTGTCTGGGAGACA
ACGTCCGATGGAGGTGGGCC

Downstream 100 bases:

>100_bases
CGTATCGGCTAGACCAGGGCGCGAAAGGAGCGAACCATGCTTCTGCAGGACATTCCGTTGCCAGCAATCGATCTGGATTA
CATCAAGCTTTATCATGAAC

Product: 3-phenylpropionate dioxygenase subunit alpha (Digoxigenin subunit alpha)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MTTIPEYLVKMRETLPKGRIPAKIFNDPQVYQLEKERLFSRAWVFLAHESEIPQPGDYVLRWIADLSVIVVRDEHGQIRA
FRNACTHRGNQVCKAEMGNASHFRCSYHGWTFKNTGELVGVPYHREVYRGQLDKNEWGLHPVRIDTYAGLIFGTLDPNAD
SLETYLGGFQFYLDFFLRPGPEGTEVYAPPERWVADTDWKICAENFGGDGYHTPVAHQFGFALGFYPSTGRTHFMGFAAH
IPGRGHCIGIGHTPGLPPFPGFPPEVVEGYQQALTPEQISVFRDARMAVATVFPNLSFLIQPFSLTPGKPGLKFCTMRLW
HPRGPGRIEMWTWCLVPKHISPELKREIYRVYSLAFGAAGTFEQDDFENWTNLSRQNAAFNADTFELAYLQGLDWEPLSD
FPGPGYAFTPYVTEIGFRNLWGTWLNYLLTPPGERVDPTKVPPAFYPTKHASAAE

Sequences:

>Translated_455_residues
MTTIPEYLVKMRETLPKGRIPAKIFNDPQVYQLEKERLFSRAWVFLAHESEIPQPGDYVLRWIADLSVIVVRDEHGQIRA
FRNACTHRGNQVCKAEMGNASHFRCSYHGWTFKNTGELVGVPYHREVYRGQLDKNEWGLHPVRIDTYAGLIFGTLDPNAD
SLETYLGGFQFYLDFFLRPGPEGTEVYAPPERWVADTDWKICAENFGGDGYHTPVAHQFGFALGFYPSTGRTHFMGFAAH
IPGRGHCIGIGHTPGLPPFPGFPPEVVEGYQQALTPEQISVFRDARMAVATVFPNLSFLIQPFSLTPGKPGLKFCTMRLW
HPRGPGRIEMWTWCLVPKHISPELKREIYRVYSLAFGAAGTFEQDDFENWTNLSRQNAAFNADTFELAYLQGLDWEPLSD
FPGPGYAFTPYVTEIGFRNLWGTWLNYLLTPPGERVDPTKVPPAFYPTKHASAAE
>Mature_454_residues
TTIPEYLVKMRETLPKGRIPAKIFNDPQVYQLEKERLFSRAWVFLAHESEIPQPGDYVLRWIADLSVIVVRDEHGQIRAF
RNACTHRGNQVCKAEMGNASHFRCSYHGWTFKNTGELVGVPYHREVYRGQLDKNEWGLHPVRIDTYAGLIFGTLDPNADS
LETYLGGFQFYLDFFLRPGPEGTEVYAPPERWVADTDWKICAENFGGDGYHTPVAHQFGFALGFYPSTGRTHFMGFAAHI
PGRGHCIGIGHTPGLPPFPGFPPEVVEGYQQALTPEQISVFRDARMAVATVFPNLSFLIQPFSLTPGKPGLKFCTMRLWH
PRGPGRIEMWTWCLVPKHISPELKREIYRVYSLAFGAAGTFEQDDFENWTNLSRQNAAFNADTFELAYLQGLDWEPLSDF
PGPGYAFTPYVTEIGFRNLWGTWLNYLLTPPGERVDPTKVPPAFYPTKHASAAE

Specific function: Part Of The Multicomponent 3-Phenylpropionate Dioxygenase. Converts 3-Phenylpropionic Acid (Pp) Into Cis-3-(3- Carboxyethyl)-3,5-Cyclohexadiene-1,2-Diol (Pp-Dihydrodiol). [C]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788888, Length=454, Percent_Identity=33.4801762114537, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1788103, Length=200, Percent_Identity=34.5, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.3 [H]

Molecular weight: Translated: 51634; Mature: 51503

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00570 RING_HYDROXYL_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIPEYLVKMRETLPKGRIPAKIFNDPQVYQLEKERLFSRAWVFLAHESEIPQPGDYVL
CCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHH
RWIADLSVIVVRDEHGQIRAFRNACTHRGNQVCKAEMGNASHFRCSYHGWTFKNTGELVG
HHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEHHHCCCCCEEEEEECCCEECCCCCEEE
VPYHREVYRGQLDKNEWGLHPVRIDTYAGLIFGTLDPNADSLETYLGGFQFYLDFFLRPG
CCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PEGTEVYAPPERWVADTDWKICAENFGGDGYHTPVAHQFGFALGFYPSTGRTHFMGFAAH
CCCCEEECCCHHCCCCCCHHHHHHCCCCCCCCCCHHHHHCCEEEECCCCCCEEEEEEEEE
IPGRGHCIGIGHTPGLPPFPGFPPEVVEGYQQALTPEQISVFRDARMAVATVFPNLSFLI
CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEE
QPFSLTPGKPGLKFCTMRLWHPRGPGRIEMWTWCLVPKHISPELKREIYRVYSLAFGAAG
EECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
TFEQDDFENWTNLSRQNAAFNADTFELAYLQGLDWEPLSDFPGPGYAFTPYVTEIGFRNL
CCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHH
WGTWLNYLLTPPGERVDPTKVPPAFYPTKHASAAE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTIPEYLVKMRETLPKGRIPAKIFNDPQVYQLEKERLFSRAWVFLAHESEIPQPGDYVL
CCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHH
RWIADLSVIVVRDEHGQIRAFRNACTHRGNQVCKAEMGNASHFRCSYHGWTFKNTGELVG
HHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEHHHCCCCCEEEEEECCCEECCCCCEEE
VPYHREVYRGQLDKNEWGLHPVRIDTYAGLIFGTLDPNADSLETYLGGFQFYLDFFLRPG
CCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PEGTEVYAPPERWVADTDWKICAENFGGDGYHTPVAHQFGFALGFYPSTGRTHFMGFAAH
CCCCEEECCCHHCCCCCCHHHHHHCCCCCCCCCCHHHHHCCEEEECCCCCCEEEEEEEEE
IPGRGHCIGIGHTPGLPPFPGFPPEVVEGYQQALTPEQISVFRDARMAVATVFPNLSFLI
CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEE
QPFSLTPGKPGLKFCTMRLWHPRGPGRIEMWTWCLVPKHISPELKREIYRVYSLAFGAAG
EECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
TFEQDDFENWTNLSRQNAAFNADTFELAYLQGLDWEPLSDFPGPGYAFTPYVTEIGFRNL
CCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHH
WGTWLNYLLTPPGERVDPTKVPPAFYPTKHASAAE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8344526 [H]