| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635742
Identifier: 221635742
GI number: 221635742
Start: 323584
End: 324174
Strand: Reverse
Name: 221635742
Synonym: trd_A0336
Alternate gene names: NA
Gene position: 324174-323584 (Counterclockwise)
Preceding gene: 221635743
Following gene: 221635741
Centisome position: 35.32
GC content: 57.7
Gene sequence:
>591_bases GTGAGCGCCAATCACTTACCCATTCGGAAACTTTATACCTTGGTTGACGAAACCCATACAGTACTCGGGGAACGTGATCC TGATGGATATTTGAGGAAAGTCGTCTGCTGTGCTGTGATCAAGAACCCTTACGCGGGGCAACCACTGGCGCATGACCTTT CCCTCCTGGTGACGCCTTCTGAGGAACTCGGCACATTGCTCGGTCGTTTAGCGGCCGAAGCACTCGGCCAACCTGTCGAA AGCTATGGCAAAGCAGCGATCGTTGGCTTGGCCGGTGAGCAGGAGCACGCCGTCGCCTGTATCACGAGCACCTTTGGGAA CGCATTTCGCACTGCCATCGGCGGAGGGAAGGCGTGGATACCCTCCAATACGAAGCTTGGCGCCCCAGGAACCAGCATCG ACATCCCATTGGCCTTCAAGGACGAACTCTGGGTGCGCAGTCACTACGACACGGTCGAAGTCCGTATTCCCGATGCGCCG CTTCCCGATGAGATCGTCGTGGCTGTCGCCGTCGCTAATCGTGGTCGGTTGTTCCATCGCCTCGGCGGGCTGTCAAAGGC GGAAGCGCTCCAGCGGACTACAGAGAAGTAA
Upstream 100 bases:
>100_bases CGCTTCGTTGCTTCGGGATCACTCATCTCAATATGCCACATACACCAGAGCAACTTTGGCGAGTCATCGGGCGCGGTGAA GCAGGAGAAAGGAGAGAAGA
Downstream 100 bases:
>100_bases GGAGAACACTCCATGCGGCTCGCACTGATAAACATCGGTTGCCTTTTTACTGGAGATATCAACAACCCCCTCCTCCCGGA CTGCGACACCGTGATCGTCG
Product: peptide synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MSANHLPIRKLYTLVDETHTVLGERDPDGYLRKVVCCAVIKNPYAGQPLAHDLSLLVTPSEELGTLLGRLAAEALGQPVE SYGKAAIVGLAGEQEHAVACITSTFGNAFRTAIGGGKAWIPSNTKLGAPGTSIDIPLAFKDELWVRSHYDTVEVRIPDAP LPDEIVVAVAVANRGRLFHRLGGLSKAEALQRTTEK
Sequences:
>Translated_196_residues MSANHLPIRKLYTLVDETHTVLGERDPDGYLRKVVCCAVIKNPYAGQPLAHDLSLLVTPSEELGTLLGRLAAEALGQPVE SYGKAAIVGLAGEQEHAVACITSTFGNAFRTAIGGGKAWIPSNTKLGAPGTSIDIPLAFKDELWVRSHYDTVEVRIPDAP LPDEIVVAVAVANRGRLFHRLGGLSKAEALQRTTEK >Mature_195_residues SANHLPIRKLYTLVDETHTVLGERDPDGYLRKVVCCAVIKNPYAGQPLAHDLSLLVTPSEELGTLLGRLAAEALGQPVES YGKAAIVGLAGEQEHAVACITSTFGNAFRTAIGGGKAWIPSNTKLGAPGTSIDIPLAFKDELWVRSHYDTVEVRIPDAPL PDEIVVAVAVANRGRLFHRLGGLSKAEALQRTTEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20973; Mature: 20842
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANHLPIRKLYTLVDETHTVLGERDPDGYLRKVVCCAVIKNPYAGQPLAHDLSLLVTPS CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC EELGTLLGRLAAEALGQPVESYGKAAIVGLAGEQEHAVACITSTFGNAFRTAIGGGKAWI HHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEC PSNTKLGAPGTSIDIPLAFKDELWVRSHYDTVEVRIPDAPLPDEIVVAVAVANRGRLFHR CCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEEECCCCCCHHHEEEEEECCCCHHHHH LGGLSKAEALQRTTEK HCCCCHHHHHHHHCCC >Mature Secondary Structure SANHLPIRKLYTLVDETHTVLGERDPDGYLRKVVCCAVIKNPYAGQPLAHDLSLLVTPS CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC EELGTLLGRLAAEALGQPVESYGKAAIVGLAGEQEHAVACITSTFGNAFRTAIGGGKAWI HHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEC PSNTKLGAPGTSIDIPLAFKDELWVRSHYDTVEVRIPDAPLPDEIVVAVAVANRGRLFHR CCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEEECCCCCCHHHEEEEEECCCCHHHHH LGGLSKAEALQRTTEK HCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA