| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635699
Identifier: 221635699
GI number: 221635699
Start: 279798
End: 280148
Strand: Reverse
Name: 221635699
Synonym: trd_A0293
Alternate gene names: NA
Gene position: 280148-279798 (Counterclockwise)
Preceding gene: 221635703
Following gene: 221635698
Centisome position: 30.53
GC content: 64.1
Gene sequence:
>351_bases GTGCCTCGTGTCGCCGGCACGTTCTTCGCTCTGGTCCAAGTCTCGTGTTCGCGCGTGCCTGGTTCCCTCAGGTATCATCG CGACACCCCCAGTCGAGCAACAGGAATCGCCGTTCTCCTCCGGAATATCGGCAGCGACAGCTCCCACCGAGAGGGACACC TAGTCATCGGAGGAGTCGCAAGCGGAGACCTCTCCTGCTCGCGCTGTTGCTGGATTGGATGCGCGGTATGCCGGTATCGA CTGGCGGCGCGAACACCAGTTAGAGGAGCGCGGTCCATTCCTTGCCACGCGACCGGCCTTGTGCCATCATCGGGCCAGCA CGGCACCCGATCGCGTGGCAGGGCAGGCTGA
Upstream 100 bases:
>100_bases TCACTCGGCCAACCGCCGGATCGTCCTCCTGCAGGACGATCGGACGACTGAACGAGGAGATTCCCTCCTCGAAGAACGCT CGCAACCGTTCCAGGAGCCC
Downstream 100 bases:
>100_bases AGCGATGACGCGGACGAGTCAGCAGACGACGCGAGCGCGGCGGTTCGCAGCGCTTTCCACCCGACTCCTGCTCCTGCTCG CGCTTCTCGTCACTGCTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MPRVAGTFFALVQVSCSRVPGSLRYHRDTPSRATGIAVLLRNIGSDSSHREGHLVIGGVASGDLSCSRCCWIGCAVCRYR LAARTPVRGARSIPCHATGLVPSSGQHGTRSRGRAG
Sequences:
>Translated_116_residues MPRVAGTFFALVQVSCSRVPGSLRYHRDTPSRATGIAVLLRNIGSDSSHREGHLVIGGVASGDLSCSRCCWIGCAVCRYR LAARTPVRGARSIPCHATGLVPSSGQHGTRSRGRAG >Mature_115_residues PRVAGTFFALVQVSCSRVPGSLRYHRDTPSRATGIAVLLRNIGSDSSHREGHLVIGGVASGDLSCSRCCWIGCAVCRYRL AARTPVRGARSIPCHATGLVPSSGQHGTRSRGRAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12216; Mature: 12085
Theoretical pI: Translated: 11.67; Mature: 11.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 6.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRVAGTFFALVQVSCSRVPGSLRYHRDTPSRATGIAVLLRNIGSDSSHREGHLVIGGVA CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECC SGDLSCSRCCWIGCAVCRYRLAARTPVRGARSIPCHATGLVPSSGQHGTRSRGRAG CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRVAGTFFALVQVSCSRVPGSLRYHRDTPSRATGIAVLLRNIGSDSSHREGHLVIGGVA CCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECC SGDLSCSRCCWIGCAVCRYRLAARTPVRGARSIPCHATGLVPSSGQHGTRSRGRAG CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA