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The map label for this gene is degS [C]

Identifier: 221635698

GI number: 221635698

Start: 278117

End: 279793

Strand: Reverse

Name: degS [C]

Synonym: trd_A0292

Alternate gene names: 221635698

Gene position: 279793-278117 (Counterclockwise)

Preceding gene: 221635699

Following gene: 221635697

Centisome position: 30.49

GC content: 68.52

Gene sequence:

>1677_bases
ATGACGCGGACGAGTCAGCAGACGACGCGAGCGCGGCGGTTCGCAGCGCTTTCCACCCGACTCCTGCTCCTGCTCGCGCT
TCTCGTCACTGCTTGCCGTAGCCTCCCCTTCCGCAACCAGCTGACACCGCCACCGACGGCGCCCCGCACCAGCGAGCAAC
CTCTTTCCTGGGCAGACGTGGAAGAGCGCCTGCGTCCTGCGACCGTCTTGGTCGAGTTCGCCCGTGGCGATCAGCCACCA
TTTCCCGTCACCGGCGTCGCCTACGCGCCAGGGCTCGTCTTGACGGTCGCTCCCCCCATCGCTGACCAGCCACCGACCCA
GGTGCGTGTCCGCGCACCCGACCAGAACGAGTCCGAACCAGCCGAACTGCTCGGTCTCAGCACGTGCGATGGGCTGGCCG
TCGTGCGCGTCGCTTCCCCCCGAAACCTCCCCCTCGCTCCGCTGGCCACGAACAAGACACCGGACATCGGCGAGGACGTC
CTCGTCTTCGGTTACCCGGCGAGCGACCCCACCAAGCCACCGATCAGCCTGCCGGCCGCAGCGACCGGCACCGCGACCGA
CCCCGACCGCGAGCGCGATGAACTCGGCGTGAACATCGCGCTCGACGACCTTATCTTCGGCGCTCTGATGGCGGATCGCT
ATGGTGCGGTACTCGGCCTGGCGCTGCCGGATGGCCGTTTCCTCCCCGCGGCGACAGCGCTCCAAATCGCCCAGACGCTC
GCCGAGGGACGCGGCGTCCTGTGGCTCGGGATCCAGCTGAGCATCCACCGCAACGCGGAGCGCTTCGGCACCGCGACCGG
TCTCGTCGTCCGCGGGGTGAACCCCGGCGGCCCCGCCGCCACCGCTGGTGTCGAGCCGGGTATGCTTCTCGCTCGTCTCG
ACGACACCGAGGTTTCCAGCTTCAGTCAGGTCTGCGGTATCCTGCGCCAGCATCGCCAGGGCGACGAACTCACCGTCGAA
CTCCGCCAGCCGCGCGCCGCCGAGATCGCCATCCTGACGACGACTATCCGCGTCGGCGAGCCGAGCCAGCGCACACCGAC
CGTCATCCGGGTCGAGCCGCGGCCAGCCGAGGGACAGCGACTCACCTACCGCTGGACGTTCGACGAGTCGACCCAGAACG
ACTGGCCGCTCGGCCGGAGCGATCTCGGCTCGGGCGAAATCGCCGACGGGGCTTATGCGGTCACGTTGACCCGCCCGCAA
GCGTTCGGCATCCTCGAGCCCCGCACCGTTCCACCCGGCACCGACCAGCGGGTCCGGACTCGCGTCACGATCCCTGACGA
AACAGGGGTCGGCCTCCTTGTCCGTTCCACTCTCGAGCCGGACCAGTCGCGTTCCTTTTATACGTGCATCGTGGTACGCT
CCGGTGGCCAACTGGTCGCGCTCTGCTCGCTTATCCTCGCCGGCGAGCCGCTCGTGCTGCTGCCAGTCACACCGCTCGCG
GTCAGCCTGCCGCCAGACGAGCCGCTCGAACTCGACCTCGCGGTCCAGGACAGCACGCTCACCTTCCGCGTCGCCAGCCA
GACCGTCGCCGATCTCGAGGACCCACTGCTCGGCAGCGGCACGATCGGTCTCTGGGTGGAAAGCTTCGACACCGTCCCGG
TCACCATCCGCTTCGACGAGGTAGAGGCCGAGCTCGTACCAGCCAGTGGCAAGACCCGTGGGCAGATAACCCGTTGA

Upstream 100 bases:

>100_bases
CCAGTTAGAGGAGCGCGGTCCATTCCTTGCCACGCGACCGGCCTTGTGCCATCATCGGGCCAGCACGGCACCCGATCGCG
TGGCAGGGCAGGCTGAAGCG

Downstream 100 bases:

>100_bases
GTATCCTGCTTTCCCGTAACCGACGCCTGCCAGACAGGTCGGTGAGCGCGAGCATGTCGGCGACATCACGGGCGCATCGC
CCGTCCGATCGGGGAGGCAC

Product: peptidase S1 and S6, chymotrypsin/Hap, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 557

Protein sequence:

>558_residues
MTRTSQQTTRARRFAALSTRLLLLLALLVTACRSLPFRNQLTPPPTAPRTSEQPLSWADVEERLRPATVLVEFARGDQPP
FPVTGVAYAPGLVLTVAPPIADQPPTQVRVRAPDQNESEPAELLGLSTCDGLAVVRVASPRNLPLAPLATNKTPDIGEDV
LVFGYPASDPTKPPISLPAAATGTATDPDRERDELGVNIALDDLIFGALMADRYGAVLGLALPDGRFLPAATALQIAQTL
AEGRGVLWLGIQLSIHRNAERFGTATGLVVRGVNPGGPAATAGVEPGMLLARLDDTEVSSFSQVCGILRQHRQGDELTVE
LRQPRAAEIAILTTTIRVGEPSQRTPTVIRVEPRPAEGQRLTYRWTFDESTQNDWPLGRSDLGSGEIADGAYAVTLTRPQ
AFGILEPRTVPPGTDQRVRTRVTIPDETGVGLLVRSTLEPDQSRSFYTCIVVRSGGQLVALCSLILAGEPLVLLPVTPLA
VSLPPDEPLELDLAVQDSTLTFRVASQTVADLEDPLLGSGTIGLWVESFDTVPVTIRFDEVEAELVPASGKTRGQITR

Sequences:

>Translated_558_residues
MTRTSQQTTRARRFAALSTRLLLLLALLVTACRSLPFRNQLTPPPTAPRTSEQPLSWADVEERLRPATVLVEFARGDQPP
FPVTGVAYAPGLVLTVAPPIADQPPTQVRVRAPDQNESEPAELLGLSTCDGLAVVRVASPRNLPLAPLATNKTPDIGEDV
LVFGYPASDPTKPPISLPAAATGTATDPDRERDELGVNIALDDLIFGALMADRYGAVLGLALPDGRFLPAATALQIAQTL
AEGRGVLWLGIQLSIHRNAERFGTATGLVVRGVNPGGPAATAGVEPGMLLARLDDTEVSSFSQVCGILRQHRQGDELTVE
LRQPRAAEIAILTTTIRVGEPSQRTPTVIRVEPRPAEGQRLTYRWTFDESTQNDWPLGRSDLGSGEIADGAYAVTLTRPQ
AFGILEPRTVPPGTDQRVRTRVTIPDETGVGLLVRSTLEPDQSRSFYTCIVVRSGGQLVALCSLILAGEPLVLLPVTPLA
VSLPPDEPLELDLAVQDSTLTFRVASQTVADLEDPLLGSGTIGLWVESFDTVPVTIRFDEVEAELVPASGKTRGQITR
>Mature_557_residues
TRTSQQTTRARRFAALSTRLLLLLALLVTACRSLPFRNQLTPPPTAPRTSEQPLSWADVEERLRPATVLVEFARGDQPPF
PVTGVAYAPGLVLTVAPPIADQPPTQVRVRAPDQNESEPAELLGLSTCDGLAVVRVASPRNLPLAPLATNKTPDIGEDVL
VFGYPASDPTKPPISLPAAATGTATDPDRERDELGVNIALDDLIFGALMADRYGAVLGLALPDGRFLPAATALQIAQTLA
EGRGVLWLGIQLSIHRNAERFGTATGLVVRGVNPGGPAATAGVEPGMLLARLDDTEVSSFSQVCGILRQHRQGDELTVEL
RQPRAAEIAILTTTIRVGEPSQRTPTVIRVEPRPAEGQRLTYRWTFDESTQNDWPLGRSDLGSGEIADGAYAVTLTRPQA
FGILEPRTVPPGTDQRVRTRVTIPDETGVGLLVRSTLEPDQSRSFYTCIVVRSGGQLVALCSLILAGEPLVLLPVTPLAV
SLPPDEPLELDLAVQDSTLTFRVASQTVADLEDPLLGSGTIGLWVESFDTVPVTIRFDEVEAELVPASGKTRGQITR

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 59739; Mature: 59608

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTSQQTTRARRFAALSTRLLLLLALLVTACRSLPFRNQLTPPPTAPRTSEQPLSWADV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
EERLRPATVLVEFARGDQPPFPVTGVAYAPGLVLTVAPPIADQPPTQVRVRAPDQNESEP
HHHCCCEEEEEEECCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCEEEEECCCCCCCCH
AELLGLSTCDGLAVVRVASPRNLPLAPLATNKTPDIGEDVLVFGYPASDPTKPPISLPAA
HHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ATGTATDPDRERDELGVNIALDDLIFGALMADRYGAVLGLALPDGRFLPAATALQIAQTL
CCCCCCCCCCCHHHCCCEEEHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHH
AEGRGVLWLGIQLSIHRNAERFGTATGLVVRGVNPGGPAATAGVEPGMLLARLDDTEVSS
HCCCCEEEEEEEEEEECCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHH
FSQVCGILRQHRQGDELTVELRQPRAAEIAILTTTIRVGEPSQRTPTVIRVEPRPAEGQR
HHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCE
LTYRWTFDESTQNDWPLGRSDLGSGEIADGAYAVTLTRPQAFGILEPRTVPPGTDQRVRT
EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEE
RVTIPDETGVGLLVRSTLEPDQSRSFYTCIVVRSGGQLVALCSLILAGEPLVLLPVTPLA
EEECCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCEE
VSLPPDEPLELDLAVQDSTLTFRVASQTVADLEDPLLGSGTIGLWVESFDTVPVTIRFDE
EECCCCCCCEEEEEEECCEEEEEECHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEC
VEAELVPASGKTRGQITR
CEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TRTSQQTTRARRFAALSTRLLLLLALLVTACRSLPFRNQLTPPPTAPRTSEQPLSWADV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
EERLRPATVLVEFARGDQPPFPVTGVAYAPGLVLTVAPPIADQPPTQVRVRAPDQNESEP
HHHCCCEEEEEEECCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCEEEEECCCCCCCCH
AELLGLSTCDGLAVVRVASPRNLPLAPLATNKTPDIGEDVLVFGYPASDPTKPPISLPAA
HHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ATGTATDPDRERDELGVNIALDDLIFGALMADRYGAVLGLALPDGRFLPAATALQIAQTL
CCCCCCCCCCCHHHCCCEEEHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHH
AEGRGVLWLGIQLSIHRNAERFGTATGLVVRGVNPGGPAATAGVEPGMLLARLDDTEVSS
HCCCCEEEEEEEEEEECCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHH
FSQVCGILRQHRQGDELTVELRQPRAAEIAILTTTIRVGEPSQRTPTVIRVEPRPAEGQR
HHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCE
LTYRWTFDESTQNDWPLGRSDLGSGEIADGAYAVTLTRPQAFGILEPRTVPPGTDQRVRT
EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEE
RVTIPDETGVGLLVRSTLEPDQSRSFYTCIVVRSGGQLVALCSLILAGEPLVLLPVTPLA
EEECCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCEE
VSLPPDEPLELDLAVQDSTLTFRVASQTVADLEDPLLGSGTIGLWVESFDTVPVTIRFDE
EECCCCCCCEEEEEEECCEEEEEECHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEC
VEAELVPASGKTRGQITR
CEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA