| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635689
Identifier: 221635689
GI number: 221635689
Start: 272173
End: 273051
Strand: Reverse
Name: 221635689
Synonym: trd_A0283
Alternate gene names: NA
Gene position: 273051-272173 (Counterclockwise)
Preceding gene: 221635690
Following gene: 221635688
Centisome position: 29.75
GC content: 69.51
Gene sequence:
>879_bases GTGGCAGACCGGTTGACGACCGTGTTCCTCCCCCTGCTCCTCGCCGCGGTGCTCGTGCCCCTCGTCTCCTTCACCCGGTT CGGTCCGACGGCAGCAGTGGGGTTCCGCTCCTTCGCCGACTACGGTTTGCCAGCAATCCAGCTGAGCGACCCGCTCCCGA ACCAGTTCGAGCTCTTCCCGCTCGACTTGCCACCGACGCCCGGTCCGGTCGTCACGCTCTTCCTCCACCTCCGCGTCGCA CTCGATCCAGCTAGCCCACCCGGCACGCTGTCAGTGTGGGACCAGCGGGCCGGCGGCAGCGCGCTTTTGTTGCGGGTCCG TTGGTCACCCGACCCGACCGGCGGCGTCCTCGAGTGGGACACGGTTGACCTGTTTGCTGGCCCACGACGCGGTTTCGTCC TCGGTCACACTCTCGAACTCGTCCTGGCCAACGTCGTTCCAGACGACTGGCGCCGGCCAGGGACCTTTCCCCTATCGCTG CATTTCGAGCGCGAGGGGGCACTCCGGGTACGCAGCATGCTCGTCTACCCGGACTCGGGCATCGAGATCGCCCGGCGCGG TCTCCCCGCCTTCTGGGTGTCGGTCGCCGCGCCACGGGACCCGCCACCGGTCGGCGCGCCGTTCGAGCTGCGCGTGCACC TGGCGCCGCGCGGGCGCACACCACCGCGCCAGGCCCAGCTCGAACTCCTCCCGTCACCGTGCGTGCGGAGCGCCGGCGGT GCGTCGTCGCTCGCCTGGTCGGACCTCACCAAGGCGACCACCGTGCGTCTGCAGCTCGAGCGGCTCACGGCGGAACCCTG CTCGTTCCAACTCGTCTGGGGCACGGAAAGCAGTAGCGGAAGCATCACCGTCCAACTCGACCGTGCCGAGGAGTCCTGA
Upstream 100 bases:
>100_bases CTGTCTCGTCCTCGCGCTCTTCACTTTCTGGGTGTACCGCAGCCAGCACCAGGTTCCAGGCAACGAGGACCGTTGAGCGA TGACCGGCGGGAGGAGCACC
Downstream 100 bases:
>100_bases CGATGCGGAAGGTATCCACTGCGTCGCTCCGCTTCCTCGGCCGGTATCTCCTCATCCTGCTGCTCCTCCTCTGGGCGGTC GGCCAGCTGGTCTGGTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MADRLTTVFLPLLLAAVLVPLVSFTRFGPTAAVGFRSFADYGLPAIQLSDPLPNQFELFPLDLPPTPGPVVTLFLHLRVA LDPASPPGTLSVWDQRAGGSALLLRVRWSPDPTGGVLEWDTVDLFAGPRRGFVLGHTLELVLANVVPDDWRRPGTFPLSL HFEREGALRVRSMLVYPDSGIEIARRGLPAFWVSVAAPRDPPPVGAPFELRVHLAPRGRTPPRQAQLELLPSPCVRSAGG ASSLAWSDLTKATTVRLQLERLTAEPCSFQLVWGTESSSGSITVQLDRAEES
Sequences:
>Translated_292_residues MADRLTTVFLPLLLAAVLVPLVSFTRFGPTAAVGFRSFADYGLPAIQLSDPLPNQFELFPLDLPPTPGPVVTLFLHLRVA LDPASPPGTLSVWDQRAGGSALLLRVRWSPDPTGGVLEWDTVDLFAGPRRGFVLGHTLELVLANVVPDDWRRPGTFPLSL HFEREGALRVRSMLVYPDSGIEIARRGLPAFWVSVAAPRDPPPVGAPFELRVHLAPRGRTPPRQAQLELLPSPCVRSAGG ASSLAWSDLTKATTVRLQLERLTAEPCSFQLVWGTESSSGSITVQLDRAEES >Mature_291_residues ADRLTTVFLPLLLAAVLVPLVSFTRFGPTAAVGFRSFADYGLPAIQLSDPLPNQFELFPLDLPPTPGPVVTLFLHLRVAL DPASPPGTLSVWDQRAGGSALLLRVRWSPDPTGGVLEWDTVDLFAGPRRGFVLGHTLELVLANVVPDDWRRPGTFPLSLH FEREGALRVRSMLVYPDSGIEIARRGLPAFWVSVAAPRDPPPVGAPFELRVHLAPRGRTPPRQAQLELLPSPCVRSAGGA SSLAWSDLTKATTVRLQLERLTAEPCSFQLVWGTESSSGSITVQLDRAEES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31688; Mature: 31557
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRLTTVFLPLLLAAVLVPLVSFTRFGPTAAVGFRSFADYGLPAIQLSDPLPNQFELFP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE LDLPPTPGPVVTLFLHLRVALDPASPPGTLSVWDQRAGGSALLLRVRWSPDPTGGVLEWD ECCCCCCCHHHHEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEEC TVDLFAGPRRGFVLGHTLELVLANVVPDDWRRPGTFPLSLHFEREGALRVRSMLVYPDSG EEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCC IEIARRGLPAFWVSVAAPRDPPPVGAPFELRVHLAPRGRTPPRQAQLELLPSPCVRSAGG HHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHCCCCC ASSLAWSDLTKATTVRLQLERLTAEPCSFQLVWGTESSSGSITVQLDRAEES CCCCHHHHHCCEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCC >Mature Secondary Structure ADRLTTVFLPLLLAAVLVPLVSFTRFGPTAAVGFRSFADYGLPAIQLSDPLPNQFELFP CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE LDLPPTPGPVVTLFLHLRVALDPASPPGTLSVWDQRAGGSALLLRVRWSPDPTGGVLEWD ECCCCCCCHHHHEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEEC TVDLFAGPRRGFVLGHTLELVLANVVPDDWRRPGTFPLSLHFEREGALRVRSMLVYPDSG EEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCC IEIARRGLPAFWVSVAAPRDPPPVGAPFELRVHLAPRGRTPPRQAQLELLPSPCVRSAGG HHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHCCCCC ASSLAWSDLTKATTVRLQLERLTAEPCSFQLVWGTESSSGSITVQLDRAEES CCCCHHHHHCCEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA