Click here to switch to the map view.

The map label for this gene is yhgD [H]

Identifier: 221635669

GI number: 221635669

Start: 249386

End: 250036

Strand: Reverse

Name: yhgD [H]

Synonym: trd_A0263

Alternate gene names: 221635669

Gene position: 250036-249386 (Counterclockwise)

Preceding gene: 221635671

Following gene: 221635668

Centisome position: 27.24

GC content: 71.43

Gene sequence:

>651_bases
ATGGCACAGCTGACCAACCAGCCCACCAGCCAGGTGCTCCAGCCGCGGGCACGCGAGCGGCGCGAGCGGATCCTCGATGC
CGCCCTGGCTGTCTTCACTCGCCGCGGCTACCGCGAGGCCACCATGGACGAGGTGGCCGAGGCGGCCGCCACTTCCAAGG
GTGGCGTCTACTTCCACTTCCCCGGGAAGGAAGCCCTCTTCCTGGCCCTGCTCGAGCGGAGTGCCGCGCTCCTCCTGCAG
CGAACGCAACTGGCGCTCGAGCGGACCCCCGACCCCGCCGGCAAGCTGGACGCCGCGCTCGACGTCGTCCTCCGCCTCTT
CGCGTCCCACCGCGACCTGGCCCGGCTCTTTCTCGTCGAGGCGCTGGCGGCCGGACCAGCCATCCAGGAGGCACTCCTGG
CGATCCGACGCCGCTTCGCCGCCCTGATCGCCAGCGAGCTCGCGCGTGCTCGAGAGGATGGCCTGATCGGCCCGCTCGAT
CCGCAGCTGGCGGCCACCGCCTGTTTCGGAGCCATCTACGAGGTCGTCACCCAGTGGCTGTTGTCCGGCTCGCCGGCCGA
TCTCGCCGAAGCCGCCCCGGAACTCCGCCGCCTGCTCCGTCGCCTGGTCGGCCTCCCCGACCGCTCGCTGGACGAGGATG
GAACCCTATGA

Upstream 100 bases:

>100_bases
GCTCTGCGCCGCTCGCGCAGGGCAGCAACCCCGGCAGCGCACCGACCAGCCGTGCTACACTGAATCCGACTGACGCGTCG
GTCGGATTCGGGAGGCCGCC

Downstream 100 bases:

>100_bases
GCTGCCGAGTGCTCGATGCTCCCCAGGCTACCCTCCAGGAACTCTGGCCGCTGGCCGAGCGGCAGGCCCGCGCGCACGAT
CGCCCAGTGATCCTGAGCTG

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MAQLTNQPTSQVLQPRARERRERILDAALAVFTRRGYREATMDEVAEAAATSKGGVYFHFPGKEALFLALLERSAALLLQ
RTQLALERTPDPAGKLDAALDVVLRLFASHRDLARLFLVEALAAGPAIQEALLAIRRRFAALIASELARAREDGLIGPLD
PQLAATACFGAIYEVVTQWLLSGSPADLAEAAPELRRLLRRLVGLPDRSLDEDGTL

Sequences:

>Translated_216_residues
MAQLTNQPTSQVLQPRARERRERILDAALAVFTRRGYREATMDEVAEAAATSKGGVYFHFPGKEALFLALLERSAALLLQ
RTQLALERTPDPAGKLDAALDVVLRLFASHRDLARLFLVEALAAGPAIQEALLAIRRRFAALIASELARAREDGLIGPLD
PQLAATACFGAIYEVVTQWLLSGSPADLAEAAPELRRLLRRLVGLPDRSLDEDGTL
>Mature_215_residues
AQLTNQPTSQVLQPRARERRERILDAALAVFTRRGYREATMDEVAEAAATSKGGVYFHFPGKEALFLALLERSAALLLQR
TQLALERTPDPAGKLDAALDVVLRLFASHRDLARLFLVEALAAGPAIQEALLAIRRRFAALIASELARAREDGLIGPLDP
QLAATACFGAIYEVVTQWLLSGSPADLAEAAPELRRLLRRLVGLPDRSLDEDGTL

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23561; Mature: 23430

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLTNQPTSQVLQPRARERRERILDAALAVFTRRGYREATMDEVAEAAATSKGGVYFHF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
PGKEALFLALLERSAALLLQRTQLALERTPDPAGKLDAALDVVLRLFASHRDLARLFLVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAGPAIQEALLAIRRRFAALIASELARAREDGLIGPLDPQLAATACFGAIYEVVTQWL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSGSPADLAEAAPELRRLLRRLVGLPDRSLDEDGTL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AQLTNQPTSQVLQPRARERRERILDAALAVFTRRGYREATMDEVAEAAATSKGGVYFHF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
PGKEALFLALLERSAALLLQRTQLALERTPDPAGKLDAALDVVLRLFASHRDLARLFLVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAGPAIQEALLAIRRRFAALIASELARAREDGLIGPLDPQLAATACFGAIYEVVTQWL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSGSPADLAEAAPELRRLLRRLVGLPDRSLDEDGTL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377 [H]