| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635551
Identifier: 221635551
GI number: 221635551
Start: 134050
End: 136404
Strand: Reverse
Name: 221635551
Synonym: trd_A0144
Alternate gene names: NA
Gene position: 136404-134050 (Counterclockwise)
Preceding gene: 221635552
Following gene: 221635548
Centisome position: 14.86
GC content: 67.47
Gene sequence:
>2355_bases GTGCGTCTCGGCGCGCTCGGGCGCGGTGGACCAGTTCCCAGCCGCCTCCCAGCCGCCTCCCCCGCGCGACTGCGCTGGCA GCGATCGCGAGCCGGGCGCGGGCCAACGGACAGCCGATCGGCGAGCAGCCGCACCGTCACCGGCGCGACCAGCCTGCGCC AGCTGACCGAATCCTTCCTCCTCGTCCGCATCCAGGCACCGCGCGCCGGAGGAGCCGGTTCCTGCCTTCCGCCTGATCGT TCGGCGTCGAGTCGGGCTCGGCCAGCAAAGCCCGACAACGCACCGGCGCGCCTGCACCGGTCAGGCCTCGATGGCGACGC AGCGTCCCACCCAACGTGCCGCCACCTGACGCCCCGCGGGCGCCCCGGTGTGCCCAGTGGACCAGGAATCCGTGCCCACG CCGCTCGCCGGGATGCAGTTGATCACCGCGCCTACCGAGCGGTGGAAAAGCACTCCGGCCAGCTGCGCACCGTTCGCGTG GCACCACGAGCGGCAGGGATCGCTCCTCCGGACATCACCGGAGACGCGTGGATCATCACCGATAGTCCACGTAAATTGCG GAGGAAATGGATGGAACCCTCTTGTGACTTGAATCCAGTACTGCGTGGCGCTATCATGACGCCAGGGTGGCGCAGCAGAG GGGAGCGCCGGATGCCCGATCCACCGCTGACGGCCGATGAGCAGCCCGAGCGCAGCGGCGACGACGTTCGTCGGCGCGGT TGGTTCTGGCACTGGAACACCATCATCACGCAGTTCGCGCCCTTGATCGGTCTCAAGGGGGTCGGTTTGCTCAATTCCTA TACCGTCTGGACCGACCGTCGGGAGCATTCACCCTATCGTGGGTACGCGTTCCCGTCCCAGCAGGCCGAAGCAGCGTTTT ACGGGGAGGATCGTGCCGAACTGATCACCATCAACAAGATCCTGGTCGCGCTCGATCTGATCGAGATCCGCAAGGAAATG GTCACGCGAACCGACGAGGCCGGTCGTCGATGGCGAGTCCCCCACAACTTCTACCGCGTCAAAGATCGCCCCGACGGCTT CGTCCTCACCCCGGAGGCGGTGCTGCGCGTCGTCGAGCTGGCCGCCCGTGACGACGCCGTCTACCGCTACATCCGACACG TCTTTTCCCCCCGCTTCGCCCCGATCGATCGCGACAACGTTTGGCACCAGATCCTTCCGGTCGTGCGCCAGCACCCCCTC TGGCAAAAGCTGGCCGCTCGAGCAGCCGCTGAGGATGCCCGCGCCTCGGCTCGTACGCGCGCCGGTCACGTGCGGCGCAA GCGCACAGCAGCCAGCGACGAGTCAGCCACATCGCTCAGCACCACTGTTGCCCAGAGCGACACTGCTCAGCCCGCCGATG TTGCGCTGAGCAACAGTGGTTCACCGACCGTTGTTGCATCCAGCGACGATGGTTTCCCCAGCGAGAGCCGAAGCAGTGTT GGCCCGGCCAACAGAGAGGAGGCAAGCAGTGTTGCTCCTGACGACACGACGTATCACCAAGGTGAGCCTACGACTACGAC GACTGCCCGCGATCCTCAGGAAGTGGCTGAGCCGCCAGCCGGCGGTGCCGGTCCGTTGCTCGAACCGTCGCCGCACGTCA TCGCCTGCTACGAAGCGGCGAACGCACGCCCCGCATCGCCGCTGGAGCGGACGCTCCTGGCCGAACTCGAGCGGGAGTTC CTCCCCTTGGCCAGCGCACGCGGTGAAAGCTCAGCTGAACTCCTCGTCGCCGCGATCCGCGAAGCTGTCGCGTCCGGCTC GCGCTACGTCGCCCCGAAGCGCATCCGCGAAATCCTCGCTCGCTGGGCGCGTCACGCCGTTCGGTCGAGCACTGCGACCA CACGAGCAGTAAGCTCTCAGCCAGCTTCCTCTCTCGCCAGTTCCGCCGTTCCGGGTCTTCACGTCGACGGGCTCCTCGCG CCGGACACGCTCGATCGACTCGTCACCTTGCTCGAGGAAGCGCTCGCCGCACGGCTGACTCGCTCGCAATCTTCTCCTTC CCAACCGGGCGGTTCCTCGCTAGCGGTCTCCCTGGGCAACTCTCCCAGCGTGCTGGAGCGAGCGAACAGCGAGCAGTCCG CCGGACTCGCCCCGCTCTGGTCGCTGGCCCAGGAGCATCTGAGCGAGCGTCTGCCTGCTTCGGCCATCGCCGAATGCATC CGACCCGCTCGACTGCTGGCTGCATCCGACGCCGGACCGGTCGTGCTCGGTGTTCCCAGCGCGACGGTCCGGCGCCACCT CGAGCGGCGTTGGCTCGCGCCTGTCCGCGAGGTGCTCGCGACCCTGCTCGATCGGCCAGTCGAGATCCACATCGTCACCT TCGCCGAGTGGGAGGGCGGGAACAGTGCCAGCTGA
Upstream 100 bases:
>100_bases GCCGGATCGGAAAACGCATTCGTGACGCGCGTGCTGTTCAGTAGCCGTACGACGCCGGTTCGCTGGACACGAGTCGACCA GCCGCCTCTCGCGCGCGGTC
Downstream 100 bases:
>100_bases GCATCCATCCTGCTCGCAACCGGCCACGATTCCTGCTCGCTGCGCCAGCGTCCTTGTCCGGGGCGTGGACGCTGGTCGAG CGCACGGCTCTCACCGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 784; Mature: 784
Protein sequence:
>784_residues MRLGALGRGGPVPSRLPAASPARLRWQRSRAGRGPTDSRSASSRTVTGATSLRQLTESFLLVRIQAPRAGGAGSCLPPDR SASSRARPAKPDNAPARLHRSGLDGDAASHPTCRHLTPRGRPGVPSGPGIRAHAARRDAVDHRAYRAVEKHSGQLRTVRV APRAAGIAPPDITGDAWIITDSPRKLRRKWMEPSCDLNPVLRGAIMTPGWRSRGERRMPDPPLTADEQPERSGDDVRRRG WFWHWNTIITQFAPLIGLKGVGLLNSYTVWTDRREHSPYRGYAFPSQQAEAAFYGEDRAELITINKILVALDLIEIRKEM VTRTDEAGRRWRVPHNFYRVKDRPDGFVLTPEAVLRVVELAARDDAVYRYIRHVFSPRFAPIDRDNVWHQILPVVRQHPL WQKLAARAAAEDARASARTRAGHVRRKRTAASDESATSLSTTVAQSDTAQPADVALSNSGSPTVVASSDDGFPSESRSSV GPANREEASSVAPDDTTYHQGEPTTTTTARDPQEVAEPPAGGAGPLLEPSPHVIACYEAANARPASPLERTLLAELEREF LPLASARGESSAELLVAAIREAVASGSRYVAPKRIREILARWARHAVRSSTATTRAVSSQPASSLASSAVPGLHVDGLLA PDTLDRLVTLLEEALAARLTRSQSSPSQPGGSSLAVSLGNSPSVLERANSEQSAGLAPLWSLAQEHLSERLPASAIAECI RPARLLAASDAGPVVLGVPSATVRRHLERRWLAPVREVLATLLDRPVEIHIVTFAEWEGGNSAS
Sequences:
>Translated_784_residues MRLGALGRGGPVPSRLPAASPARLRWQRSRAGRGPTDSRSASSRTVTGATSLRQLTESFLLVRIQAPRAGGAGSCLPPDR SASSRARPAKPDNAPARLHRSGLDGDAASHPTCRHLTPRGRPGVPSGPGIRAHAARRDAVDHRAYRAVEKHSGQLRTVRV APRAAGIAPPDITGDAWIITDSPRKLRRKWMEPSCDLNPVLRGAIMTPGWRSRGERRMPDPPLTADEQPERSGDDVRRRG WFWHWNTIITQFAPLIGLKGVGLLNSYTVWTDRREHSPYRGYAFPSQQAEAAFYGEDRAELITINKILVALDLIEIRKEM VTRTDEAGRRWRVPHNFYRVKDRPDGFVLTPEAVLRVVELAARDDAVYRYIRHVFSPRFAPIDRDNVWHQILPVVRQHPL WQKLAARAAAEDARASARTRAGHVRRKRTAASDESATSLSTTVAQSDTAQPADVALSNSGSPTVVASSDDGFPSESRSSV GPANREEASSVAPDDTTYHQGEPTTTTTARDPQEVAEPPAGGAGPLLEPSPHVIACYEAANARPASPLERTLLAELEREF LPLASARGESSAELLVAAIREAVASGSRYVAPKRIREILARWARHAVRSSTATTRAVSSQPASSLASSAVPGLHVDGLLA PDTLDRLVTLLEEALAARLTRSQSSPSQPGGSSLAVSLGNSPSVLERANSEQSAGLAPLWSLAQEHLSERLPASAIAECI RPARLLAASDAGPVVLGVPSATVRRHLERRWLAPVREVLATLLDRPVEIHIVTFAEWEGGNSAS >Mature_784_residues MRLGALGRGGPVPSRLPAASPARLRWQRSRAGRGPTDSRSASSRTVTGATSLRQLTESFLLVRIQAPRAGGAGSCLPPDR SASSRARPAKPDNAPARLHRSGLDGDAASHPTCRHLTPRGRPGVPSGPGIRAHAARRDAVDHRAYRAVEKHSGQLRTVRV APRAAGIAPPDITGDAWIITDSPRKLRRKWMEPSCDLNPVLRGAIMTPGWRSRGERRMPDPPLTADEQPERSGDDVRRRG WFWHWNTIITQFAPLIGLKGVGLLNSYTVWTDRREHSPYRGYAFPSQQAEAAFYGEDRAELITINKILVALDLIEIRKEM VTRTDEAGRRWRVPHNFYRVKDRPDGFVLTPEAVLRVVELAARDDAVYRYIRHVFSPRFAPIDRDNVWHQILPVVRQHPL WQKLAARAAAEDARASARTRAGHVRRKRTAASDESATSLSTTVAQSDTAQPADVALSNSGSPTVVASSDDGFPSESRSSV GPANREEASSVAPDDTTYHQGEPTTTTTARDPQEVAEPPAGGAGPLLEPSPHVIACYEAANARPASPLERTLLAELEREF LPLASARGESSAELLVAAIREAVASGSRYVAPKRIREILARWARHAVRSSTATTRAVSSQPASSLASSAVPGLHVDGLLA PDTLDRLVTLLEEALAARLTRSQSSPSQPGGSSLAVSLGNSPSVLERANSEQSAGLAPLWSLAQEHLSERLPASAIAECI RPARLLAASDAGPVVLGVPSATVRRHLERRWLAPVREVLATLLDRPVEIHIVTFAEWEGGNSAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84859; Mature: 84859
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGALGRGGPVPSRLPAASPARLRWQRSRAGRGPTDSRSASSRTVTGATSLRQLTESFL CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHE LVRIQAPRAGGAGSCLPPDRSASSRARPAKPDNAPARLHRSGLDGDAASHPTCRHLTPRG EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC RPGVPSGPGIRAHAARRDAVDHRAYRAVEKHSGQLRTVRVAPRAAGIAPPDITGDAWIIT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCCCEEEEE DSPRKLRRKWMEPSCDLNPVLRGAIMTPGWRSRGERRMPDPPLTADEQPERSGDDVRRRG CCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC WFWHWNTIITQFAPLIGLKGVGLLNSYTVWTDRREHSPYRGYAFPSQQAEAAFYGEDRAE CEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LITINKILVALDLIEIRKEMVTRTDEAGRRWRVPHNFYRVKDRPDGFVLTPEAVLRVVEL EEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCEEECHHHHHHHHHH AARDDAVYRYIRHVFSPRFAPIDRDNVWHQILPVVRQHPLWQKLAARAAAEDARASARTR HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AGHVRRKRTAASDESATSLSTTVAQSDTAQPADVALSNSGSPTVVASSDDGFPSESRSSV HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCC GPANREEASSVAPDDTTYHQGEPTTTTTARDPQEVAEPPAGGAGPLLEPSPHVIACYEAA CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECC NARPASPLERTLLAELEREFLPLASARGESSAELLVAAIREAVASGSRYVAPKRIREILA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RWARHAVRSSTATTRAVSSQPASSLASSAVPGLHVDGLLAPDTLDRLVTLLEEALAARLT HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHH RSQSSPSQPGGSSLAVSLGNSPSVLERANSEQSAGLAPLWSLAQEHLSERLPASAIAECI HCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH RPARLLAASDAGPVVLGVPSATVRRHLERRWLAPVREVLATLLDRPVEIHIVTFAEWEGG HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC NSAS CCCC >Mature Secondary Structure MRLGALGRGGPVPSRLPAASPARLRWQRSRAGRGPTDSRSASSRTVTGATSLRQLTESFL CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHE LVRIQAPRAGGAGSCLPPDRSASSRARPAKPDNAPARLHRSGLDGDAASHPTCRHLTPRG EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC RPGVPSGPGIRAHAARRDAVDHRAYRAVEKHSGQLRTVRVAPRAAGIAPPDITGDAWIIT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCCCEEEEE DSPRKLRRKWMEPSCDLNPVLRGAIMTPGWRSRGERRMPDPPLTADEQPERSGDDVRRRG CCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC WFWHWNTIITQFAPLIGLKGVGLLNSYTVWTDRREHSPYRGYAFPSQQAEAAFYGEDRAE CEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LITINKILVALDLIEIRKEMVTRTDEAGRRWRVPHNFYRVKDRPDGFVLTPEAVLRVVEL EEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCEEECHHHHHHHHHH AARDDAVYRYIRHVFSPRFAPIDRDNVWHQILPVVRQHPLWQKLAARAAAEDARASARTR HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AGHVRRKRTAASDESATSLSTTVAQSDTAQPADVALSNSGSPTVVASSDDGFPSESRSSV HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCC GPANREEASSVAPDDTTYHQGEPTTTTTARDPQEVAEPPAGGAGPLLEPSPHVIACYEAA CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECC NARPASPLERTLLAELEREFLPLASARGESSAELLVAAIREAVASGSRYVAPKRIREILA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RWARHAVRSSTATTRAVSSQPASSLASSAVPGLHVDGLLAPDTLDRLVTLLEEALAARLT HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHH RSQSSPSQPGGSSLAVSLGNSPSVLERANSEQSAGLAPLWSLAQEHLSERLPASAIAECI HCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH RPARLLAASDAGPVVLGVPSATVRRHLERRWLAPVREVLATLLDRPVEIHIVTFAEWEGG HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC NSAS CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA