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The map label for this gene is ydhC [H]

Identifier: 221635483

GI number: 221635483

Start: 65573

End: 66286

Strand: Reverse

Name: ydhC [H]

Synonym: trd_A0077

Alternate gene names: 221635483

Gene position: 66286-65573 (Counterclockwise)

Preceding gene: 221635484

Following gene: 221635482

Centisome position: 7.22

GC content: 62.89

Gene sequence:

>714_bases
ATGTCGCAGAGACAGATCACACGGCCCGATCGCTCGCTCCCGCGCCCCATCGTCCGTCGAGTGCTGCGCGAAGAAATCAA
GGAGTATCTCATCGATGCCATCCTGCGCGGTCAGCTCAGGCCGGGTGACCGGATCATCGAAACGCGGATCGCGCAGGACC
TCGGCGTGAGCCAGACCCCTGTCCGCGAAGCACTGCGTGATCTCGAACTCCTCGGCTTCGTCACCAGCGAACCGTTTCGC
GGCACGCGCGTCCGTGCGTTCACCCACGAGGAACTCGTGCAGATCTATCCGATCCGAGCAGCGATCGAAGGTGTCGCGGC
TCGCGCTGCTGCCACGCGCATCACCACCGAGCAGCTGCTCGCCCTCGAAGAGCAGATCGACCGCATGCGGGAAGCCAGTG
AACTCGGCGACGAAGGGACGGCGATCGAGGCTGATATCGCCTTCCATCGCATCATCGTCGAAGCCTCGGGAAACCGCCTG
CTCGAGCAGTTTTGGACCAGCTTGAGTTTAGCGACGACCACTTTTCTGACGTTTTCCATTCACCGCCGGGCTATCGAAGG
CCTCGCTGCGCGGCACGAACCGATCCTGGAAGCGCTGCGTGCGCGCGATCCTGATCGTGCCGAGGCTGCTATGCGTCGCC
ACATCGAGGAGCCGGGTCGGTGGGTGTACGAAGCCTTGTCGCGTGAAGATCCGGAACCACAGCAGAGTTCCTGA

Upstream 100 bases:

>100_bases
AAGGCGCTCCGCCCAGCCAGCGCTTGACGGCAGGTATCGAAACGGGTAAGCTGATCATGGAGAATCGATTCTCGATATTC
AAAGAACAGCGAGGCGGCTG

Downstream 100 bases:

>100_bases
CGAAAGGAGCACGTTCGTGGGTGTCAAGCTGATCGATCTTTCCATGCCGGTGCACAACGAGATGATGACCTTTCCCCGTG
TTCCACCACCGAAGATCGAG

Product: transcriptional Regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSQRQITRPDRSLPRPIVRRVLREEIKEYLIDAILRGQLRPGDRIIETRIAQDLGVSQTPVREALRDLELLGFVTSEPFR
GTRVRAFTHEELVQIYPIRAAIEGVAARAAATRITTEQLLALEEQIDRMREASELGDEGTAIEADIAFHRIIVEASGNRL
LEQFWTSLSLATTTFLTFSIHRRAIEGLAARHEPILEALRARDPDRAEAAMRRHIEEPGRWVYEALSREDPEPQQSS

Sequences:

>Translated_237_residues
MSQRQITRPDRSLPRPIVRRVLREEIKEYLIDAILRGQLRPGDRIIETRIAQDLGVSQTPVREALRDLELLGFVTSEPFR
GTRVRAFTHEELVQIYPIRAAIEGVAARAAATRITTEQLLALEEQIDRMREASELGDEGTAIEADIAFHRIIVEASGNRL
LEQFWTSLSLATTTFLTFSIHRRAIEGLAARHEPILEALRARDPDRAEAAMRRHIEEPGRWVYEALSREDPEPQQSS
>Mature_236_residues
SQRQITRPDRSLPRPIVRRVLREEIKEYLIDAILRGQLRPGDRIIETRIAQDLGVSQTPVREALRDLELLGFVTSEPFRG
TRVRAFTHEELVQIYPIRAAIEGVAARAAATRITTEQLLALEEQIDRMREASELGDEGTAIEADIAFHRIIVEASGNRLL
EQFWTSLSLATTTFLTFSIHRRAIEGLAARHEPILEALRARDPDRAEAAMRRHIEEPGRWVYEALSREDPEPQQSS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=30.7317073170732, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081914, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789353, Length=239, Percent_Identity=28.4518828451883, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27034; Mature: 26903

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRQITRPDRSLPRPIVRRVLREEIKEYLIDAILRGQLRPGDRIIETRIAQDLGVSQTP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
VREALRDLELLGFVTSEPFRGTRVRAFTHEELVQIYPIRAAIEGVAARAAATRITTEQLL
HHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEEQIDRMREASELGDEGTAIEADIAFHRIIVEASGNRLLEQFWTSLSLATTTFLTFSI
HHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
HRRAIEGLAARHEPILEALRARDPDRAEAAMRRHIEEPGRWVYEALSREDPEPQQSS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQRQITRPDRSLPRPIVRRVLREEIKEYLIDAILRGQLRPGDRIIETRIAQDLGVSQTP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
VREALRDLELLGFVTSEPFRGTRVRAFTHEELVQIYPIRAAIEGVAARAAATRITTEQLL
HHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEEQIDRMREASELGDEGTAIEADIAFHRIIVEASGNRLLEQFWTSLSLATTTFLTFSI
HHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
HRRAIEGLAARHEPILEALRARDPDRAEAAMRRHIEEPGRWVYEALSREDPEPQQSS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]