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The map label for this gene is ygeR [C]

Identifier: 221633912

GI number: 221633912

Start: 1955929

End: 1957557

Strand: Reverse

Name: ygeR [C]

Synonym: trd_1939

Alternate gene names: 221633912

Gene position: 1957557-1955929 (Counterclockwise)

Preceding gene: 221633915

Following gene: 221633911

Centisome position: 97.73

GC content: 65.19

Gene sequence:

>1629_bases
ATGCCGACCAACCCGCCGAGCGAGGAGTATCGTGAGCCGTCCGCCACCCGAGAGGTGCGCTTCGGCTGGACGCCTGAGCT
GGACGCCGCGCGCGAACCAGCGAATGGGCATCGGAACGGGTACCCCGCGATCGAATCGACCGACGCAGTGCACGAGCGGC
TCGCTGCTCGTAGCAATGGTGTGTTCGCGGGCAGTGCGAACGGCACCGTCGTCGCCCCTCCTAAACCGCCACGACCTCTC
CTGCATGCACCGAAACGAACGGAGCAGCGGCTCCAGCGCCGGTGGACGACTCGCACGATCGGACGCTGGTGCCTCCATCT
CGCGGTCGTCGTCTGCGTCGCCACAGTTGCGATCGGCGGAGGATTCTGGCGACGCCCCGTGCCGATCCGTGTCGCAGCTG
GAACCGACCAGATCACGGTGATCCAGGACGTCCTGCCCGGCGCGCAGGGCCAACCGGTCGCGAGCGTTCCCGATCTGACG
GTGAGCGATCCGCGCATCGGTTATCTGGCGACGGGCGGGCTCGCTGTCAAGCCAGATGTCCTCGTGCTCGATACCTATGT
GACGGCAGCGGGAGAAACGATCTACGATGTGGCGCGAGCGACTGGCCGGAGCATCGAGACGCTGCTCTGGGCGAACAATC
TCCTCGATCCTGGAGCACCGTTACCGGCTGGGCTGCAGCTCCGCGTTCCACCAGTCGATGGCATGCTGCACCTGGTGCGC
GAGGGCGACACGATCGAGGCGATCGCGGCACGCTACGGTGTGCAACCCGACGCGATCACCGGCTACGAGCCCAACGGCGT
GCAGCGTGACACCGATCTGGTGCCGAATCGCCTGATCATGGTACCGGGTGGCAAGATGCCCCAACGCGACCGCGTGGTCA
TGTACACCGTCCAGGAAGGGGATACGCTCTGGAAGATCGCCCAGCGCTTCGGCCTCAAGGTGCAGACGATCACCTGGGCG
AACTCCTTGCCTGATCCTGAACTGATCTATCCCGGCCAGCAGCTGGCGATCTTGCCGACCGATGGCGTCATGGTCAAAGT
CAAGGAAGGCGACACGATCGAATCCTTGGCCAAGTACTGGGGAGTCGAGCCGGACGCGATCCGCAACTACCCTATGAACG
GGATCGGGCCGAACGGCGTCCTGCGCGTCGGCCAGCTCGTGATGATCCCGGGCGGTGAGCCACCCCCGCCACCGCCGCCA
CCACCGCCGCCTCCCGCCCCACGGGCATCAGCGCCGAGCAATCCACCCGCTCAGCGCCAAGCACCCCGTGGCTCCTTCAT
CTGGCCGACGACCGGGGTCATCACGCAGTACTTCCATGCCCGGCATAACGGGTGGGACATCGCCAACAACATGTACACAC
CGATCGTGGCGGCTGACAGCGGAACGGTCATTTTCAGCGGGTGGAACAACTACGGGCTCGGGTACGCCGTTGCGATCGAT
CACGGAAACGGCTTCGTGACCTGGTACGGGCACATGGCCGAACCACCACCAGTGCAGGTCGGACAGTGGGTCAACCAGGG
ACAGTACATCGGCCCGATGGGGAGCACCGGCTACTCGACCGGCCCGCATGTCCACTTCATCATCATGTACAACGGCGTCT
ACCAGGACCCGGCGCTCTACCTGGGATGA

Upstream 100 bases:

>100_bases
GACATGTTATCCTGCGCGTGAGGATCGGGTAATCGGCGAGTTCGGCATCACGACGAGCGAATCGACGAGCCGCTGAGGGA
AGGGAAGCCGGATAGGGACG

Downstream 100 bases:

>100_bases
GGCCGGTGAGAGGAAGGGCACGACCATGATTCGACCACTCAGCGCACTGTTCGGGTTGTTCAGCCGCGACCTCGGTATCG
ACCTGGGCACGGCGAACACG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 541

Protein sequence:

>542_residues
MPTNPPSEEYREPSATREVRFGWTPELDAAREPANGHRNGYPAIESTDAVHERLAARSNGVFAGSANGTVVAPPKPPRPL
LHAPKRTEQRLQRRWTTRTIGRWCLHLAVVVCVATVAIGGGFWRRPVPIRVAAGTDQITVIQDVLPGAQGQPVASVPDLT
VSDPRIGYLATGGLAVKPDVLVLDTYVTAAGETIYDVARATGRSIETLLWANNLLDPGAPLPAGLQLRVPPVDGMLHLVR
EGDTIEAIAARYGVQPDAITGYEPNGVQRDTDLVPNRLIMVPGGKMPQRDRVVMYTVQEGDTLWKIAQRFGLKVQTITWA
NSLPDPELIYPGQQLAILPTDGVMVKVKEGDTIESLAKYWGVEPDAIRNYPMNGIGPNGVLRVGQLVMIPGGEPPPPPPP
PPPPPAPRASAPSNPPAQRQAPRGSFIWPTTGVITQYFHARHNGWDIANNMYTPIVAADSGTVIFSGWNNYGLGYAVAID
HGNGFVTWYGHMAEPPPVQVGQWVNQGQYIGPMGSTGYSTGPHVHFIIMYNGVYQDPALYLG

Sequences:

>Translated_542_residues
MPTNPPSEEYREPSATREVRFGWTPELDAAREPANGHRNGYPAIESTDAVHERLAARSNGVFAGSANGTVVAPPKPPRPL
LHAPKRTEQRLQRRWTTRTIGRWCLHLAVVVCVATVAIGGGFWRRPVPIRVAAGTDQITVIQDVLPGAQGQPVASVPDLT
VSDPRIGYLATGGLAVKPDVLVLDTYVTAAGETIYDVARATGRSIETLLWANNLLDPGAPLPAGLQLRVPPVDGMLHLVR
EGDTIEAIAARYGVQPDAITGYEPNGVQRDTDLVPNRLIMVPGGKMPQRDRVVMYTVQEGDTLWKIAQRFGLKVQTITWA
NSLPDPELIYPGQQLAILPTDGVMVKVKEGDTIESLAKYWGVEPDAIRNYPMNGIGPNGVLRVGQLVMIPGGEPPPPPPP
PPPPPAPRASAPSNPPAQRQAPRGSFIWPTTGVITQYFHARHNGWDIANNMYTPIVAADSGTVIFSGWNNYGLGYAVAID
HGNGFVTWYGHMAEPPPVQVGQWVNQGQYIGPMGSTGYSTGPHVHFIIMYNGVYQDPALYLG
>Mature_541_residues
PTNPPSEEYREPSATREVRFGWTPELDAAREPANGHRNGYPAIESTDAVHERLAARSNGVFAGSANGTVVAPPKPPRPLL
HAPKRTEQRLQRRWTTRTIGRWCLHLAVVVCVATVAIGGGFWRRPVPIRVAAGTDQITVIQDVLPGAQGQPVASVPDLTV
SDPRIGYLATGGLAVKPDVLVLDTYVTAAGETIYDVARATGRSIETLLWANNLLDPGAPLPAGLQLRVPPVDGMLHLVRE
GDTIEAIAARYGVQPDAITGYEPNGVQRDTDLVPNRLIMVPGGKMPQRDRVVMYTVQEGDTLWKIAQRFGLKVQTITWAN
SLPDPELIYPGQQLAILPTDGVMVKVKEGDTIESLAKYWGVEPDAIRNYPMNGIGPNGVLRVGQLVMIPGGEPPPPPPPP
PPPPAPRASAPSNPPAQRQAPRGSFIWPTTGVITQYFHARHNGWDIANNMYTPIVAADSGTVIFSGWNNYGLGYAVAIDH
GNGFVTWYGHMAEPPPVQVGQWVNQGQYIGPMGSTGYSTGPHVHFIIMYNGVYQDPALYLG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=216, Percent_Identity=31.4814814814815, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 58587; Mature: 58456

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTNPPSEEYREPSATREVRFGWTPELDAAREPANGHRNGYPAIESTDAVHERLAARSNG
CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
VFAGSANGTVVAPPKPPRPLLHAPKRTEQRLQRRWTTRTIGRWCLHLAVVVCVATVAIGG
EEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFWRRPVPIRVAAGTDQITVIQDVLPGAQGQPVASVPDLTVSDPRIGYLATGGLAVKPDV
CCCCCCCEEEEECCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCE
LVLDTYVTAAGETIYDVARATGRSIETLLWANNLLDPGAPLPAGLQLRVPPVDGMLHLVR
EEEEEEHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
EGDTIEAIAARYGVQPDAITGYEPNGVQRDTDLVPNRLIMVPGGKMPQRDRVVMYTVQEG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCC
DTLWKIAQRFGLKVQTITWANSLPDPELIYPGQQLAILPTDGVMVKVKEGDTIESLAKYW
CHHHHHHHHHCCEEEEEEECCCCCCCCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHH
GVEPDAIRNYPMNGIGPNGVLRVGQLVMIPGGEPPPPPPPPPPPPAPRASAPSNPPAQRQ
CCCHHHHHCCCCCCCCCCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
APRGSFIWPTTGVITQYFHARHNGWDIANNMYTPIVAADSGTVIFSGWNNYGLGYAVAID
CCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEE
HGNGFVTWYGHMAEPPPVQVGQWVNQGQYIGPMGSTGYSTGPHVHFIIMYNGVYQDPALY
CCCEEEEEECCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEE
LG
CC
>Mature Secondary Structure 
PTNPPSEEYREPSATREVRFGWTPELDAAREPANGHRNGYPAIESTDAVHERLAARSNG
CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
VFAGSANGTVVAPPKPPRPLLHAPKRTEQRLQRRWTTRTIGRWCLHLAVVVCVATVAIGG
EEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFWRRPVPIRVAAGTDQITVIQDVLPGAQGQPVASVPDLTVSDPRIGYLATGGLAVKPDV
CCCCCCCEEEEECCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCE
LVLDTYVTAAGETIYDVARATGRSIETLLWANNLLDPGAPLPAGLQLRVPPVDGMLHLVR
EEEEEEHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
EGDTIEAIAARYGVQPDAITGYEPNGVQRDTDLVPNRLIMVPGGKMPQRDRVVMYTVQEG
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCC
DTLWKIAQRFGLKVQTITWANSLPDPELIYPGQQLAILPTDGVMVKVKEGDTIESLAKYW
CHHHHHHHHHCCEEEEEEECCCCCCCCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHH
GVEPDAIRNYPMNGIGPNGVLRVGQLVMIPGGEPPPPPPPPPPPPAPRASAPSNPPAQRQ
CCCHHHHHCCCCCCCCCCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
APRGSFIWPTTGVITQYFHARHNGWDIANNMYTPIVAADSGTVIFSGWNNYGLGYAVAID
CCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEE
HGNGFVTWYGHMAEPPPVQVGQWVNQGQYIGPMGSTGYSTGPHVHFIIMYNGVYQDPALY
CCCEEEEEECCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEE
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]