| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633893
Identifier: 221633893
GI number: 221633893
Start: 1929787
End: 1931148
Strand: Reverse
Name: 221633893
Synonym: trd_1920
Alternate gene names: NA
Gene position: 1931148-1929787 (Counterclockwise)
Preceding gene: 221633896
Following gene: 221633890
Centisome position: 96.41
GC content: 65.12
Gene sequence:
>1362_bases ATGGCGAAACGACTGCTGACGGTGCTCGTGTTGCTCAGCCTGGTAGTCTCCCTGGTCGTTCCAGGAGCCGCTCTGGCGCA AGGTCAGGGCGGTGGCAAAGCTGGGACGACGCTCAAAGACGCCTCCGTCACGGCCACCCCGCACTGGTACCGCGACTACG ATTGGACGGTGACCAAGACAGCCGACCCGACCAGCCTGACACTCGAGAAGGGGCAAAGCGCGAGCGTCACCTTCACGATC ACTGCCGACCGCGGTGAGCCGGTCGACACGTATGAGGTGACCGGCCAGGTCTGCGTCAGGAACGGCGGCGAGCGTCCGAC TGAGAATCTCAAGATCCAAGTGCGGCTCCTCTACCAGACGGGTGGTGGTCCCTATCGAGAATTGGTAGGCTGGCAACTGG TCGACGTCTCCTCGAAAGAGGTGCTCGGCCCTGGCGAGAGCTACTGCTACCCCTACACGATCCCCTTCACGCCGGTAGCG GGTGCCTCCTACAAAGTGGACTCCAAGATCACCATCACGAACCATTCGGGGCATCTTGGTAAGGAGTTCGGCCCCTCGCC CGATTCGGACAGCTTCAAGCTTCCCAGCTCGCCGGAAGAGCGGGACGAGAGCGCGACCATCTCCGACACGCTGACCTGCC CCAGCGGGTTCACCTGCTCGCCGAGCGGACCGTGGAACTGGACCGTGTATGACGACTGGACTGGGCAACTCGAGATCACT GTCACCAACGACACGGTCTGCAACGCGACCGTCGAACTGGTCAACGCGGTGACGCTGACCGAGGACGACAGCGGTCAGAC TCACACCGCCTCGGCGACCGTGACGATCACCGCGCCGGACTGCCCGACCACGCCGGGTGGCGGGATGGAGGGCTGCACCT ACACGCAGGGCTACTGGAAGAACCATCCGAGTGCGTGGCCCGCGGGGTACTCGCCGGATGCCACGTTCTTCGACAGCGGC AAGACCTGGCGCGGGGTCCTCTGGACACCGCCGCGGCGGGGCGACGAATACTACATCCTGGCCCACCAGTACATCGCTGC GGTCCTGAACGTGGCGAATGGCGCCACCGCGCCGGATAGCGTCCAGGCGGCGATCGACGCGGCGACCGCGTACTTCGAAG ACACGTCATCAGCGAGCCGCGATCAGGTGCTCGCCTGGGCCGACACGCTGGCGCAGTTCAACGAAGGGTATCTCGGCCCT GGTCACTGCACGAGCTCGAGCGGCGGCGGAGGCTCGGGCAAGCCGCGCACCGGCGGCCCGCCGAACACGATCGCACCGAT CACGCCGTGCGATCCGACGAAGAAGGCGTGCAGTGGGCCAGGGAATCCACGCAACATCGTCAAGCCGCGGATCAAGAAGT AG
Upstream 100 bases:
>100_bases GGAGGTGGGCGATGCGGTAGGGAGCAGGATGCTGACGGATCGAACGCCACGGCGGCGATAGCACCAGACAGGCCGACGGT GCAGAAAGGGAGGAAATCCC
Downstream 100 bases:
>100_bases CTGACTCCGCGCGCAGGGCGGCCGGGGCCGAAAGCCCCGGCCGCCCGTCTCCGCCTCACCACACGACCGCGCCGCCGGAC CCCCGCATCGCGCCAGCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MAKRLLTVLVLLSLVVSLVVPGAALAQGQGGGKAGTTLKDASVTATPHWYRDYDWTVTKTADPTSLTLEKGQSASVTFTI TADRGEPVDTYEVTGQVCVRNGGERPTENLKIQVRLLYQTGGGPYRELVGWQLVDVSSKEVLGPGESYCYPYTIPFTPVA GASYKVDSKITITNHSGHLGKEFGPSPDSDSFKLPSSPEERDESATISDTLTCPSGFTCSPSGPWNWTVYDDWTGQLEIT VTNDTVCNATVELVNAVTLTEDDSGQTHTASATVTITAPDCPTTPGGGMEGCTYTQGYWKNHPSAWPAGYSPDATFFDSG KTWRGVLWTPPRRGDEYYILAHQYIAAVLNVANGATAPDSVQAAIDAATAYFEDTSSASRDQVLAWADTLAQFNEGYLGP GHCTSSSGGGGSGKPRTGGPPNTIAPITPCDPTKKACSGPGNPRNIVKPRIKK
Sequences:
>Translated_453_residues MAKRLLTVLVLLSLVVSLVVPGAALAQGQGGGKAGTTLKDASVTATPHWYRDYDWTVTKTADPTSLTLEKGQSASVTFTI TADRGEPVDTYEVTGQVCVRNGGERPTENLKIQVRLLYQTGGGPYRELVGWQLVDVSSKEVLGPGESYCYPYTIPFTPVA GASYKVDSKITITNHSGHLGKEFGPSPDSDSFKLPSSPEERDESATISDTLTCPSGFTCSPSGPWNWTVYDDWTGQLEIT VTNDTVCNATVELVNAVTLTEDDSGQTHTASATVTITAPDCPTTPGGGMEGCTYTQGYWKNHPSAWPAGYSPDATFFDSG KTWRGVLWTPPRRGDEYYILAHQYIAAVLNVANGATAPDSVQAAIDAATAYFEDTSSASRDQVLAWADTLAQFNEGYLGP GHCTSSSGGGGSGKPRTGGPPNTIAPITPCDPTKKACSGPGNPRNIVKPRIKK >Mature_452_residues AKRLLTVLVLLSLVVSLVVPGAALAQGQGGGKAGTTLKDASVTATPHWYRDYDWTVTKTADPTSLTLEKGQSASVTFTIT ADRGEPVDTYEVTGQVCVRNGGERPTENLKIQVRLLYQTGGGPYRELVGWQLVDVSSKEVLGPGESYCYPYTIPFTPVAG ASYKVDSKITITNHSGHLGKEFGPSPDSDSFKLPSSPEERDESATISDTLTCPSGFTCSPSGPWNWTVYDDWTGQLEITV TNDTVCNATVELVNAVTLTEDDSGQTHTASATVTITAPDCPTTPGGGMEGCTYTQGYWKNHPSAWPAGYSPDATFFDSGK TWRGVLWTPPRRGDEYYILAHQYIAAVLNVANGATAPDSVQAAIDAATAYFEDTSSASRDQVLAWADTLAQFNEGYLGPG HCTSSSGGGGSGKPRTGGPPNTIAPITPCDPTKKACSGPGNPRNIVKPRIKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48036; Mature: 47904
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRLLTVLVLLSLVVSLVVPGAALAQGQGGGKAGTTLKDASVTATPHWYRDYDWTVTKT CHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCEEEECCCEECCCCEEEECC ADPTSLTLEKGQSASVTFTITADRGEPVDTYEVTGQVCVRNGGERPTENLKIQVRLLYQT CCCCEEEEECCCCCEEEEEEECCCCCCCCEEEECCEEEEECCCCCCCCCEEEEEEEEEEC GGGPYRELVGWQLVDVSSKEVLGPGESYCYPYTIPFTPVAGASYKVDSKITITNHSGHLG CCCHHHHHHCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCC KEFGPSPDSDSFKLPSSPEERDESATISDTLTCPSGFTCSPSGPWNWTVYDDWTGQLEIT CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEEEECCCCEEEEE VTNDTVCNATVELVNAVTLTEDDSGQTHTASATVTITAPDCPTTPGGGMEGCTYTQGYWK ECCCCHHHHHEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEECCCHHC NHPSAWPAGYSPDATFFDSGKTWRGVLWTPPRRGDEYYILAHQYIAAVLNVANGATAPDS CCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHH VQAAIDAATAYFEDTSSASRDQVLAWADTLAQFNEGYLGPGHCTSSSGGGGSGKPRTGGP HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PNTIAPITPCDPTKKACSGPGNPRNIVKPRIKK CCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCC >Mature Secondary Structure AKRLLTVLVLLSLVVSLVVPGAALAQGQGGGKAGTTLKDASVTATPHWYRDYDWTVTKT HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCEEEECCCEECCCCEEEECC ADPTSLTLEKGQSASVTFTITADRGEPVDTYEVTGQVCVRNGGERPTENLKIQVRLLYQT CCCCEEEEECCCCCEEEEEEECCCCCCCCEEEECCEEEEECCCCCCCCCEEEEEEEEEEC GGGPYRELVGWQLVDVSSKEVLGPGESYCYPYTIPFTPVAGASYKVDSKITITNHSGHLG CCCHHHHHHCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCC KEFGPSPDSDSFKLPSSPEERDESATISDTLTCPSGFTCSPSGPWNWTVYDDWTGQLEIT CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEEEECCCCEEEEE VTNDTVCNATVELVNAVTLTEDDSGQTHTASATVTITAPDCPTTPGGGMEGCTYTQGYWK ECCCCHHHHHEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEECCCHHC NHPSAWPAGYSPDATFFDSGKTWRGVLWTPPRRGDEYYILAHQYIAAVLNVANGATAPDS CCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHH VQAAIDAATAYFEDTSSASRDQVLAWADTLAQFNEGYLGPGHCTSSSGGGGSGKPRTGGP HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PNTIAPITPCDPTKKACSGPGNPRNIVKPRIKK CCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA