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The map label for this gene is dppC [H]

Identifier: 221633833

GI number: 221633833

Start: 1870562

End: 1871455

Strand: Reverse

Name: dppC [H]

Synonym: trd_1860

Alternate gene names: 221633833

Gene position: 1871455-1870562 (Counterclockwise)

Preceding gene: 221633834

Following gene: 221633832

Centisome position: 93.43

GC content: 65.55

Gene sequence:

>894_bases
ATGGTGACGACCGCCCGACCAGCCGAGCGCTTGGGAACGTCCCGCAGCTGGTCGGACCGACCTGGTTTGCGCATCCTCCG
GGCGCTGCTGCGGCGCCCTAGTGCCGCGGTGGGGTTGGTGATCTTGCTCTTCTGGATCATCGTCGCATTCACCGTCACGT
TCGTGATTCCCTTCGACCCACTGGTGACCGATGTCAGTGCCCGTCTCCAACCACCCAGCGCCGCATACTGGTTCGGCACC
GATGACCTCGGACGAGACATCTTCCGGCGAACGCTCTACGGGGCACGGATCTCGCTCCCGGCTGGTTTCCTCACGGTCGC
TGGTGCCTTGCTGATCGGCTCGGTCATCGGCGCGGTCGCCGGCTATGCCGGGGGCTGGGTCGACGTCATCCTCATGCGCA
TTGCAGACATGGTCCTGGCATTCCCTTCCATCGTGCTGGCGATGGCGATCGCCGCAGCGCTCGGACCAGGACTCAAGAAC
GCGCTCATCGCGATCGTCGTCGTCCTCTGGCCGGAATACGCACGCTTGATGCGCGCGCAGGTGCTCGCCATCAAGACACA
GGAGTTCGTCACCGCAGCTGAGTCGCTCGGGGTCAGCCGACTCCGTCTCCTGCTCGTCCACATCTTGCCCAATACCCAAG
CACCACTCGTGGTCAAGGCCACGCTCGACGTCGGCGCAGCCATCGTGCTCACCGCAGGGCTCTCCTTCATCGGACTCGGC
GCCGTTCCTCCCGCGCCCGAGTGGGGTGCGATGATCCGGGAGGGACAGCGCCGCTTCAGCCAATGGTGGATGGCGACTTT
CCCCGGCTTGGCGATCTTCAGCGTCGTCATGGCGCTCAACTTCCTCGGTGATGGCCTGCGCGACGCACTCGATCCGCGGC
GGCGCGGCCGGTAA

Upstream 100 bases:

>100_bases
CGTTGCTCATCGCCGTGGTCTACGTCGTCGTCAACTTCCTGACCGATGTGCTCTACGGCATGCTCGATCCGCGGATCCGC
GTCAGTTGAGGAGCGACCGC

Downstream 100 bases:

>100_bases
GCTGGTCGAGGGAAAGCGGGAAGGGAGCGAACCGATGCGGAAACGGTGCACACTGCGTGGACTCGCGCGATGGCTCGTTT
GGGGGTTGATCGGCGCTGCC

Product: inner membrane ABC transporter permease YddQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVTTARPAERLGTSRSWSDRPGLRILRALLRRPSAAVGLVILLFWIIVAFTVTFVIPFDPLVTDVSARLQPPSAAYWFGT
DDLGRDIFRRTLYGARISLPAGFLTVAGALLIGSVIGAVAGYAGGWVDVILMRIADMVLAFPSIVLAMAIAAALGPGLKN
ALIAIVVVLWPEYARLMRAQVLAIKTQEFVTAAESLGVSRLRLLLVHILPNTQAPLVVKATLDVGAAIVLTAGLSFIGLG
AVPPAPEWGAMIREGQRRFSQWWMATFPGLAIFSVVMALNFLGDGLRDALDPRRRGR

Sequences:

>Translated_297_residues
MVTTARPAERLGTSRSWSDRPGLRILRALLRRPSAAVGLVILLFWIIVAFTVTFVIPFDPLVTDVSARLQPPSAAYWFGT
DDLGRDIFRRTLYGARISLPAGFLTVAGALLIGSVIGAVAGYAGGWVDVILMRIADMVLAFPSIVLAMAIAAALGPGLKN
ALIAIVVVLWPEYARLMRAQVLAIKTQEFVTAAESLGVSRLRLLLVHILPNTQAPLVVKATLDVGAAIVLTAGLSFIGLG
AVPPAPEWGAMIREGQRRFSQWWMATFPGLAIFSVVMALNFLGDGLRDALDPRRRGR
>Mature_297_residues
MVTTARPAERLGTSRSWSDRPGLRILRALLRRPSAAVGLVILLFWIIVAFTVTFVIPFDPLVTDVSARLQPPSAAYWFGT
DDLGRDIFRRTLYGARISLPAGFLTVAGALLIGSVIGAVAGYAGGWVDVILMRIADMVLAFPSIVLAMAIAAALGPGLKN
ALIAIVVVLWPEYARLMRAQVLAIKTQEFVTAAESLGVSRLRLLLVHILPNTQAPLVVKATLDVGAAIVLTAGLSFIGLG
AVPPAPEWGAMIREGQRRFSQWWMATFPGLAIFSVVMALNFLGDGLRDALDPRRRGR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=277, Percent_Identity=45.4873646209386, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1787054, Length=278, Percent_Identity=44.2446043165468, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=44.3579766536965, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=41.8032786885246, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI1787498, Length=224, Percent_Identity=36.6071428571429, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787549, Length=230, Percent_Identity=36.9565217391304, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=28.8888888888889, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31963; Mature: 31963

Theoretical pI: Translated: 11.68; Mature: 11.68

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTARPAERLGTSRSWSDRPGLRILRALLRRPSAAVGLVILLFWIIVAFTVTFVIPFDP
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LVTDVSARLQPPSAAYWFGTDDLGRDIFRRTLYGARISLPAGFLTVAGALLIGSVIGAVA
HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHH
GYAGGWVDVILMRIADMVLAFPSIVLAMAIAAALGPGLKNALIAIVVVLWPEYARLMRAQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VLAIKTQEFVTAAESLGVSRLRLLLVHILPNTQAPLVVKATLDVGAAIVLTAGLSFIGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC
AVPPAPEWGAMIREGQRRFSQWWMATFPGLAIFSVVMALNFLGDGLRDALDPRRRGR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MVTTARPAERLGTSRSWSDRPGLRILRALLRRPSAAVGLVILLFWIIVAFTVTFVIPFDP
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LVTDVSARLQPPSAAYWFGTDDLGRDIFRRTLYGARISLPAGFLTVAGALLIGSVIGAVA
HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHH
GYAGGWVDVILMRIADMVLAFPSIVLAMAIAAALGPGLKNALIAIVVVLWPEYARLMRAQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VLAIKTQEFVTAAESLGVSRLRLLLVHILPNTQAPLVVKATLDVGAAIVLTAGLSFIGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC
AVPPAPEWGAMIREGQRRFSQWWMATFPGLAIFSVVMALNFLGDGLRDALDPRRRGR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]