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The map label for this gene is dppB [H]

Identifier: 221633834

GI number: 221633834

Start: 1871467

End: 1872483

Strand: Reverse

Name: dppB [H]

Synonym: trd_1861

Alternate gene names: 221633834

Gene position: 1872483-1871467 (Counterclockwise)

Preceding gene: 221633835

Following gene: 221633833

Centisome position: 93.48

GC content: 64.11

Gene sequence:

>1017_bases
ATGTTCGGCCGTTTCGTCCTGCGGCGCCTGCTCGTCACGATGCCGCTCCTCGTCGGGGTGACTCTGGTCACCTTCGCGGT
CTCCCACCTGATCCCCGCCGATCCGCTCATGGCGATCCTGCCGGAGCGCGCCGCCAACGATCCGCAGACGGTGCAGATGT
ACCGGGAGCGATGGGGGCTCGACCGCTCGCTCCCGGAGCAGTATCTCTTCTACCTGCGCAATCTCCTGCGCGGCGATCTC
GGCGAGTCGTACACCTCGCGTCGTCCCGTCATGCAGGACCTGCGCGAGCGCTTTCCCGCGACGGTCGAACTGGCGCTGGC
CGCGATGCTCTACGCCGTCACGCTCGGGCTGACCTTGGGGGTGCTCTCGGCTATCTGGTACGAGCGCTGGATCGACCACG
TGGCCAGGCTCGTCGCCTTGGTCGGAGTCTCCCTGCCGGTCTTCTGGCTAGGACTCTTGGCTCTGCAACTCTTTTACGCC
AATCTTCGCTTGTTACCGGGTCCGGGACGGATCGATCCGCGCCTCACCGCTCCGCCCTTCCGAACCGGCTTCTACACCAT
CGATAGCCTCTTGGCTGGTGATTGGTCCCTCTTTCTCAACGTGCTCTCCCATCTCGTGCTTCCCGGCATGGTGCTGGGCA
GTTATGCGATGGGCATCATCGCGCGGATGACCCGGTCGGCGCTTCTCGATGTGCTCGGTGCTGATTACATCCGCACTGCC
CGCGCCAAGGGATTAGCCGAACGGCGGGTCATTCTCGTCCACGCATTGCGTAACGCGCTCATCCCAACCGTCACGGTGAT
CGGACTGACCTTCGGGAGTTTGCTCGCTGGTGCCGTGCTGACCGAGACCATCTTCGCCTGGCCCGGCATCGGCCGCTACG
CGGTCGATGCCGCGATGAAACTCGATCTTCCGGCCGTCCTGGGCGTGACGTTGCTCATCGCCGTGGTCTACGTCGTCGTC
AACTTCCTGACCGATGTGCTCTACGGCATGCTCGATCCGCGGATCCGCGTCAGTTGA

Upstream 100 bases:

>100_bases
CGTGCAGGGATACGTGTTCGATCCGGTCATCGGGGTCGATCTGAGCAAGGTCCGCAAGAGCTAGGATCGGCACCCTTCAG
CCGCCCGAGGAGCCTGGACC

Downstream 100 bases:

>100_bases
GGAGCGACCGCATGGTGACGACCGCCCGACCAGCCGAGCGCTTGGGAACGTCCCGCAGCTGGTCGGACCGACCTGGTTTG
CGCATCCTCCGGGCGCTGCT

Product: dipeptide transport system permease dppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MFGRFVLRRLLVTMPLLVGVTLVTFAVSHLIPADPLMAILPERAANDPQTVQMYRERWGLDRSLPEQYLFYLRNLLRGDL
GESYTSRRPVMQDLRERFPATVELALAAMLYAVTLGLTLGVLSAIWYERWIDHVARLVALVGVSLPVFWLGLLALQLFYA
NLRLLPGPGRIDPRLTAPPFRTGFYTIDSLLAGDWSLFLNVLSHLVLPGMVLGSYAMGIIARMTRSALLDVLGADYIRTA
RAKGLAERRVILVHALRNALIPTVTVIGLTFGSLLAGAVLTETIFAWPGIGRYAVDAAMKLDLPAVLGVTLLIAVVYVVV
NFLTDVLYGMLDPRIRVS

Sequences:

>Translated_338_residues
MFGRFVLRRLLVTMPLLVGVTLVTFAVSHLIPADPLMAILPERAANDPQTVQMYRERWGLDRSLPEQYLFYLRNLLRGDL
GESYTSRRPVMQDLRERFPATVELALAAMLYAVTLGLTLGVLSAIWYERWIDHVARLVALVGVSLPVFWLGLLALQLFYA
NLRLLPGPGRIDPRLTAPPFRTGFYTIDSLLAGDWSLFLNVLSHLVLPGMVLGSYAMGIIARMTRSALLDVLGADYIRTA
RAKGLAERRVILVHALRNALIPTVTVIGLTFGSLLAGAVLTETIFAWPGIGRYAVDAAMKLDLPAVLGVTLLIAVVYVVV
NFLTDVLYGMLDPRIRVS
>Mature_338_residues
MFGRFVLRRLLVTMPLLVGVTLVTFAVSHLIPADPLMAILPERAANDPQTVQMYRERWGLDRSLPEQYLFYLRNLLRGDL
GESYTSRRPVMQDLRERFPATVELALAAMLYAVTLGLTLGVLSAIWYERWIDHVARLVALVGVSLPVFWLGLLALQLFYA
NLRLLPGPGRIDPRLTAPPFRTGFYTIDSLLAGDWSLFLNVLSHLVLPGMVLGSYAMGIIARMTRSALLDVLGADYIRTA
RAKGLAERRVILVHALRNALIPTVTVIGLTFGSLLAGAVLTETIFAWPGIGRYAVDAAMKLDLPAVLGVTLLIAVVYVVV
NFLTDVLYGMLDPRIRVS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=46.7261904761905, Blast_Score=303, Evalue=8e-84,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=48.3383685800604, Blast_Score=280, Evalue=9e-77,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=37.2372372372372, Blast_Score=237, Evalue=9e-64,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=35.7142857142857, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=32.3353293413174, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1787550, Length=332, Percent_Identity=30.1204819277108, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788504, Length=374, Percent_Identity=22.9946524064171, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37413; Mature: 37413

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGRFVLRRLLVTMPLLVGVTLVTFAVSHLIPADPLMAILPERAANDPQTVQMYRERWGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHCCCCHHHHHHHHHHHCC
DRSLPEQYLFYLRNLLRGDLGESYTSRRPVMQDLRERFPATVELALAAMLYAVTLGLTLG
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VLSAIWYERWIDHVARLVALVGVSLPVFWLGLLALQLFYANLRLLPGPGRIDPRLTAPPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RTGFYTIDSLLAGDWSLFLNVLSHLVLPGMVLGSYAMGIIARMTRSALLDVLGADYIRTA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLAERRVILVHALRNALIPTVTVIGLTFGSLLAGAVLTETIFAWPGIGRYAVDAAMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LDLPAVLGVTLLIAVVYVVVNFLTDVLYGMLDPRIRVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFGRFVLRRLLVTMPLLVGVTLVTFAVSHLIPADPLMAILPERAANDPQTVQMYRERWGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHCCCCHHHHHHHHHHHCC
DRSLPEQYLFYLRNLLRGDLGESYTSRRPVMQDLRERFPATVELALAAMLYAVTLGLTLG
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VLSAIWYERWIDHVARLVALVGVSLPVFWLGLLALQLFYANLRLLPGPGRIDPRLTAPPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RTGFYTIDSLLAGDWSLFLNVLSHLVLPGMVLGSYAMGIIARMTRSALLDVLGADYIRTA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLAERRVILVHALRNALIPTVTVIGLTFGSLLAGAVLTETIFAWPGIGRYAVDAAMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LDLPAVLGVTLLIAVVYVVVNFLTDVLYGMLDPRIRVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]