| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633710
Identifier: 221633710
GI number: 221633710
Start: 1741779
End: 1742153
Strand: Reverse
Name: 221633710
Synonym: trd_1737
Alternate gene names: NA
Gene position: 1742153-1741779 (Counterclockwise)
Preceding gene: 221633711
Following gene: 221633705
Centisome position: 86.98
GC content: 67.73
Gene sequence:
>375_bases TTGGCGCGTATCCCGCTCTTCGCGCTCGCGCTGCTGGCGGAGTGGATCCCGCTCCTGGTGACGATCGCGAGCTCGGTCCT GATCCAGAATGCAAAAGGGCTCGTCATCGCTCCGCTCGTCGAGGGGGAGCGACTCGATGTCCATCCCCTGGCAGCGCTGG TGGCCGTTCTGTCTGGGGCCGAACTCGGGGGCGTTGCCGGTGCTGCGCTCGCGTTGCCGGTTGTCGTCGTCCTGGACGTG TTGTGGGACCGATCAGTGAAACCGTGGTTGGTCCGCGGCCGAGCGATCAGCGAGGAGCCGGGGAGCGCGGGGAAAAAAGA GTGCGGAGACCCCTGCTGCCACGCCGTGACCGGGCGAGCGCGTTCCGGCCAGTAG
Upstream 100 bases:
>100_bases AGGGACTGCGCTCGTGCTCTGGCCGCTCGGTGTCCCCTCCCCGCTCCTCCTCGGTCTTCTCGTGGCAGTGGGCGAATTCG TGCCGCGGATCGGACCGTAG
Downstream 100 bases:
>100_bases AACGCATTCCAGCCAGCCTGCACAGCAGAGCAGAAGCGGAGCGGGGCGGATCGAGCGTGGCCAGCGAAAAGACAGACGCT CCCGCCCGAGAGCGCGTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGAELGGVAGAALALPVVVVLDV LWDRSVKPWLVRGRAISEEPGSAGKKECGDPCCHAVTGRARSGQ
Sequences:
>Translated_124_residues MARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGAELGGVAGAALALPVVVVLDV LWDRSVKPWLVRGRAISEEPGSAGKKECGDPCCHAVTGRARSGQ >Mature_123_residues ARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGAELGGVAGAALALPVVVVLDVL WDRSVKPWLVRGRAISEEPGSAGKKECGDPCCHAVTGRARSGQ
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12818; Mature: 12687
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC ELGGVAGAALALPVVVVLDVLWDRSVKPWLVRGRAISEEPGSAGKKECGDPCCHAVTGRA CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC RSGQ CCCC >Mature Secondary Structure ARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC ELGGVAGAALALPVVVVLDVLWDRSVKPWLVRGRAISEEPGSAGKKECGDPCCHAVTGRA CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC RSGQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA