| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633693
Identifier: 221633693
GI number: 221633693
Start: 1725593
End: 1727245
Strand: Reverse
Name: 221633693
Synonym: trd_1720
Alternate gene names: NA
Gene position: 1727245-1725593 (Counterclockwise)
Preceding gene: 221633694
Following gene: 221633692
Centisome position: 86.23
GC content: 65.52
Gene sequence:
>1653_bases ATGCACAGTGCTGTGGCGATCTCCTGCAACCAGGGGATGACGCGGATCGTGCTGGCCGACCGCGTCGAGGGTGAGCCACG ACTGCTCGGAACGGTGGCGGTTCCTGGCCGGGACGTCGAGACCGGATTGGCGTTCGCCGAAGAGCGCTTCGGTCGCCGAT TGCTCGCCGAGGAGCGCCCGATCCGTCCGCGTGGCCTGCTGGGAGACGGCGCCGACGCCTGGATCGCGGTCGGTAGTCCG GCGAGCGTTCCGCTCCTCGCAGTGCTGGCCATCGCACTGGACCCGTTGCTGACAGACCTCGCCAAGCGTGCTGCCGAAGC AGCCATGGTCGAGACCCACTGGATCGACGCCACGCAAGTAGCAAGCCTGACGGCGCTGGTGCAACAGCTCGTGGAACTGC GTCCTCGCTTTCTCCTGCTGACGGGGGGATCCGATGAGTCTGCCTGGCAGTCGGCCATGGTGGCAGTGAGCAACGCGCTC GGCGACGCATTTGACCTCGAAGTCGGTATCGTCATCGCGCCGGAAGCGATCCAGCAGCTCGTGGCGAAGACGATCGGCGA TCAGGTCGAACTCATGGGTGTCGATCCGACCACCTCCCAGCCAGCTGAGGTCGTCCGCGCGGTGACGAGCGAGTTTCGCT CCCGGGTGGCAACGCTGCTGTCAGCGGAGTTGAAAGCACTGGAACTGGATCGCTTCGTCGATCGTGCCACGGCATTGGAG CGTGCGCTTGCCTTTCTCGTCCGGCGTGCTGATCAGCGTGTCGCTCTCGTCGATCTCGAGCAGGGGATGCTCGGTATCTG GGCGCGTTCCGAGGGGATGTTGACGCTCTATCGAGCTGGGCGTGACCTCGAGCAGGGGGCGCTCGGACTGGCAGCACTCG GTCCCGAGACGATCGCGCGCTGGCTTCCTTTTCCGATGACCGAAGAAGACATCCTCGACTGGCTCGCCAATCGCGTCATG ACGGCGTCTCCTTTCCTTTTCGAGTGGCGTGACCAACTCATCGCGACTGCGGCGGTGCGAGCGCTCGTGCAGGATCTGGC GAGCGCAGGGCCACCGAGCGGAATGCGCGAGGATCTCACGCTCGTCGTACTCGGACCACGTCTGGCTTGGCTTCCTGCGG AACTCGCATTGCTGTGCGCGCTCGATGGGTTCGCGCCACTTCCGGCTGGCGGGCTCGTCAGTGTCGCGCTCGACGAGGCG GATCTCCTGGCGACGTGCGGTGCGCTCGCTGAAATCGATCCGGGATACGCGGCGACACTCCTGGAGCGGGATGCGCTCTT CCCGTTGGCTCATGTCATCGTTGTGGCTGGTGATGCCATGGAGGGAGCGATCGCCGTCCGCGGCGAGGTTCGTGCGGGTG ATCTGGTGCACCGCTTCGCGGTGCCCTGGGGGAGTTTGCACGTCCTACCGTTTCCTTCTGGCCGTTCAGCGGAACTTCTC GTGGAGCCGGAAGCAGGTATTCGTATCGGGTGTCTCGAGCCAGGGGTCGCGATCGAGTTCGCTGGCGAGGCAGCGCTCGG TTGGACGCGTCTCGGAATCGTGATCGACGCGCGAGGACGCCCCTTGCGGTTACCGGACGATCCGCCAGTTCGCGCTCGGC GGATCCGTTCCTGGCTGGCTGACCTCGGTGTGGCGGAGGGGGTGATGCGGTGA
Upstream 100 bases:
>100_bases AATCGCTCTGTTCCTGGCACTGGCAGTCTTGATCGGTGTGGTCTTGTACATCTTGTGGCAGAGCCGGTAGCGCGCCCGGG AGGTAGTGAGGAGAGCGCGC
Downstream 100 bases:
>100_bases GCGCTCTCGGGCGCCTGCCCTTGGTCGCGCAAGATGTGGAGTGCCTCGTGCGACATCGCTTGGCTGCACCGGAACTGCGC GTCGCTGTTGGGCAACTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MHSAVAISCNQGMTRIVLADRVEGEPRLLGTVAVPGRDVETGLAFAEERFGRRLLAEERPIRPRGLLGDGADAWIAVGSP ASVPLLAVLAIALDPLLTDLAKRAAEAAMVETHWIDATQVASLTALVQQLVELRPRFLLLTGGSDESAWQSAMVAVSNAL GDAFDLEVGIVIAPEAIQQLVAKTIGDQVELMGVDPTTSQPAEVVRAVTSEFRSRVATLLSAELKALELDRFVDRATALE RALAFLVRRADQRVALVDLEQGMLGIWARSEGMLTLYRAGRDLEQGALGLAALGPETIARWLPFPMTEEDILDWLANRVM TASPFLFEWRDQLIATAAVRALVQDLASAGPPSGMREDLTLVVLGPRLAWLPAELALLCALDGFAPLPAGGLVSVALDEA DLLATCGALAEIDPGYAATLLERDALFPLAHVIVVAGDAMEGAIAVRGEVRAGDLVHRFAVPWGSLHVLPFPSGRSAELL VEPEAGIRIGCLEPGVAIEFAGEAALGWTRLGIVIDARGRPLRLPDDPPVRARRIRSWLADLGVAEGVMR
Sequences:
>Translated_550_residues MHSAVAISCNQGMTRIVLADRVEGEPRLLGTVAVPGRDVETGLAFAEERFGRRLLAEERPIRPRGLLGDGADAWIAVGSP ASVPLLAVLAIALDPLLTDLAKRAAEAAMVETHWIDATQVASLTALVQQLVELRPRFLLLTGGSDESAWQSAMVAVSNAL GDAFDLEVGIVIAPEAIQQLVAKTIGDQVELMGVDPTTSQPAEVVRAVTSEFRSRVATLLSAELKALELDRFVDRATALE RALAFLVRRADQRVALVDLEQGMLGIWARSEGMLTLYRAGRDLEQGALGLAALGPETIARWLPFPMTEEDILDWLANRVM TASPFLFEWRDQLIATAAVRALVQDLASAGPPSGMREDLTLVVLGPRLAWLPAELALLCALDGFAPLPAGGLVSVALDEA DLLATCGALAEIDPGYAATLLERDALFPLAHVIVVAGDAMEGAIAVRGEVRAGDLVHRFAVPWGSLHVLPFPSGRSAELL VEPEAGIRIGCLEPGVAIEFAGEAALGWTRLGIVIDARGRPLRLPDDPPVRARRIRSWLADLGVAEGVMR >Mature_550_residues MHSAVAISCNQGMTRIVLADRVEGEPRLLGTVAVPGRDVETGLAFAEERFGRRLLAEERPIRPRGLLGDGADAWIAVGSP ASVPLLAVLAIALDPLLTDLAKRAAEAAMVETHWIDATQVASLTALVQQLVELRPRFLLLTGGSDESAWQSAMVAVSNAL GDAFDLEVGIVIAPEAIQQLVAKTIGDQVELMGVDPTTSQPAEVVRAVTSEFRSRVATLLSAELKALELDRFVDRATALE RALAFLVRRADQRVALVDLEQGMLGIWARSEGMLTLYRAGRDLEQGALGLAALGPETIARWLPFPMTEEDILDWLANRVM TASPFLFEWRDQLIATAAVRALVQDLASAGPPSGMREDLTLVVLGPRLAWLPAELALLCALDGFAPLPAGGLVSVALDEA DLLATCGALAEIDPGYAATLLERDALFPLAHVIVVAGDAMEGAIAVRGEVRAGDLVHRFAVPWGSLHVLPFPSGRSAELL VEPEAGIRIGCLEPGVAIEFAGEAALGWTRLGIVIDARGRPLRLPDDPPVRARRIRSWLADLGVAEGVMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58654; Mature: 58654
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSAVAISCNQGMTRIVLADRVEGEPRLLGTVAVPGRDVETGLAFAEERFGRRLLAEERP CCCEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC IRPRGLLGDGADAWIAVGSPASVPLLAVLAIALDPLLTDLAKRAAEAAMVETHWIDATQV CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ASLTALVQQLVELRPRFLLLTGGSDESAWQSAMVAVSNALGDAFDLEVGIVIAPEAIQQL HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHH VAKTIGDQVELMGVDPTTSQPAEVVRAVTSEFRSRVATLLSAELKALELDRFVDRATALE HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALAFLVRRADQRVALVDLEQGMLGIWARSEGMLTLYRAGRDLEQGALGLAALGPETIAR HHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCHHHCCCEEECCCHHHHHH WLPFPMTEEDILDWLANRVMTASPFLFEWRDQLIATAAVRALVQDLASAGPPSGMREDLT HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE LVVLGPRLAWLPAELALLCALDGFAPLPAGGLVSVALDEADLLATCGALAEIDPGYAATL EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHH LERDALFPLAHVIVVAGDAMEGAIAVRGEVRAGDLVHRFAVPWGSLHVLPFPSGRSAELL HHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEE VEPEAGIRIGCLEPGVAIEFAGEAALGWTRLGIVIDARGRPLRLPDDPPVRARRIRSWLA ECCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH DLGVAEGVMR HHHHHHHCCC >Mature Secondary Structure MHSAVAISCNQGMTRIVLADRVEGEPRLLGTVAVPGRDVETGLAFAEERFGRRLLAEERP CCCEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC IRPRGLLGDGADAWIAVGSPASVPLLAVLAIALDPLLTDLAKRAAEAAMVETHWIDATQV CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ASLTALVQQLVELRPRFLLLTGGSDESAWQSAMVAVSNALGDAFDLEVGIVIAPEAIQQL HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHH VAKTIGDQVELMGVDPTTSQPAEVVRAVTSEFRSRVATLLSAELKALELDRFVDRATALE HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALAFLVRRADQRVALVDLEQGMLGIWARSEGMLTLYRAGRDLEQGALGLAALGPETIAR HHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCHHHCCCEEECCCHHHHHH WLPFPMTEEDILDWLANRVMTASPFLFEWRDQLIATAAVRALVQDLASAGPPSGMREDLT HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE LVVLGPRLAWLPAELALLCALDGFAPLPAGGLVSVALDEADLLATCGALAEIDPGYAATL EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHH LERDALFPLAHVIVVAGDAMEGAIAVRGEVRAGDLVHRFAVPWGSLHVLPFPSGRSAELL HHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEE VEPEAGIRIGCLEPGVAIEFAGEAALGWTRLGIVIDARGRPLRLPDDPPVRARRIRSWLA ECCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH DLGVAEGVMR HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA