| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633692
Identifier: 221633692
GI number: 221633692
Start: 1724484
End: 1725596
Strand: Reverse
Name: 221633692
Synonym: trd_1719
Alternate gene names: NA
Gene position: 1725596-1724484 (Counterclockwise)
Preceding gene: 221633693
Following gene: 221633687
Centisome position: 86.15
GC content: 68.19
Gene sequence:
>1113_bases GTGAGCGCTCTCGGGCGCCTGCCCTTGGTCGCGCAAGATGTGGAGTGCCTCGTGCGACATCGCTTGGCTGCACCGGAACT GCGCGTCGCTGTTGGGCAACTGGTCGAACCGGAGACGATCCTGGCGATGGCGGCCGACGGCCTGCCACGCAGTGCACGGA TCGCGCTCGCGGCGGAACTCGGAGTCGCACCAGCGGACGCAGCGCGCTACCTGGTGCGTGCGCTCGGGGAGCGCGTCGAG GCGGGTGAAGTGGTGGCAGTGCGTCGCCGAGGGCTGCGAAGCCAAGAAGTGACCAGCCCGATCGCTGGGCGATTGGCAAC GCTGGATGCCGAAACCGGTCTCTTGACCGTGGTGACCGATCCACCGCGGCGGGCGGTACCTGCTCTCGTCGCAGGCGAGG TGAGAAGCGTTGCCGACGATGCAGTGACGATTCGTGCCATCGGTGATCTTCTGCTCGGAGCAAGCCTCCTCGGTCGGGAA AGCGCTGGTCCACTGATCGTTCTGGCCGATCGGCCGGATCGTGAACTCCCCGCCGAGGAGTTCGACGAGCGCTGCCGCGG AGCGATCGTTCTGGCCGGTATGACGGTGAGCAGCGCTGCGCTCCGGCGCCTCCACGATGTGGGAGCGGCCGGTGTGATCG TGGGCGGTCTCTCGACACACGCGCTCGAGCCGTTCTGGGGAAGCGCGGCGCCGACCCGTCTCCAGCGGGCACTGGTCGAC CCGAGTGCGGACTGGCCGTTTCCCTTCGGTGTGCTCATGCTGGAGGGATTCGGTCGTCTCCCCGTGCCGGAACCGGCCTT CGACTTTCTGGCCGAGCGTGCCGGACGATGGGTCGCGCTCCTGTCGAGCGCAAGTCTCGGACTCGATCGTCCAGCCTGCT TCGTGTCCTCGCGGAGCTTGCAGGGGCAACCTCTCCAACCGATCGCGCTGGTTCCCGGTGCGGTGGTGCATCTCCGGCTG CCGGCCCGGCCGGGGCTCGGTCGCCTGGTGAGCGTGCCGTTTGTGGCTCGCCAGCCGGATAGCTTGGCGTTCCGGGCGGT CTGGGTCGAGCGGGACGGAAACCGTGAGATCGTGCCGGTCGATCTCGTCGATCCGGTCGCAGCTGATGCCTGA
Upstream 100 bases:
>100_bases CGCGAGGACGCCCCTTGCGGTTACCGGACGATCCGCCAGTTCGCGCTCGGCGGATCCGTTCCTGGCTGGCTGACCTCGGT GTGGCGGAGGGGGTGATGCG
Downstream 100 bases:
>100_bases GCCTCGCTCAGCTGGCGCGGCGTTCGCGTTGACGTTGCGCGTACAAGACAGCAACCTCGTCGGGTAAGCGACCCAGTTCC TGCCGGAGTTGCAAGAAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MSALGRLPLVAQDVECLVRHRLAAPELRVAVGQLVEPETILAMAADGLPRSARIALAAELGVAPADAARYLVRALGERVE AGEVVAVRRRGLRSQEVTSPIAGRLATLDAETGLLTVVTDPPRRAVPALVAGEVRSVADDAVTIRAIGDLLLGASLLGRE SAGPLIVLADRPDRELPAEEFDERCRGAIVLAGMTVSSAALRRLHDVGAAGVIVGGLSTHALEPFWGSAAPTRLQRALVD PSADWPFPFGVLMLEGFGRLPVPEPAFDFLAERAGRWVALLSSASLGLDRPACFVSSRSLQGQPLQPIALVPGAVVHLRL PARPGLGRLVSVPFVARQPDSLAFRAVWVERDGNREIVPVDLVDPVAADA
Sequences:
>Translated_370_residues MSALGRLPLVAQDVECLVRHRLAAPELRVAVGQLVEPETILAMAADGLPRSARIALAAELGVAPADAARYLVRALGERVE AGEVVAVRRRGLRSQEVTSPIAGRLATLDAETGLLTVVTDPPRRAVPALVAGEVRSVADDAVTIRAIGDLLLGASLLGRE SAGPLIVLADRPDRELPAEEFDERCRGAIVLAGMTVSSAALRRLHDVGAAGVIVGGLSTHALEPFWGSAAPTRLQRALVD PSADWPFPFGVLMLEGFGRLPVPEPAFDFLAERAGRWVALLSSASLGLDRPACFVSSRSLQGQPLQPIALVPGAVVHLRL PARPGLGRLVSVPFVARQPDSLAFRAVWVERDGNREIVPVDLVDPVAADA >Mature_369_residues SALGRLPLVAQDVECLVRHRLAAPELRVAVGQLVEPETILAMAADGLPRSARIALAAELGVAPADAARYLVRALGERVEA GEVVAVRRRGLRSQEVTSPIAGRLATLDAETGLLTVVTDPPRRAVPALVAGEVRSVADDAVTIRAIGDLLLGASLLGRES AGPLIVLADRPDRELPAEEFDERCRGAIVLAGMTVSSAALRRLHDVGAAGVIVGGLSTHALEPFWGSAAPTRLQRALVDP SADWPFPFGVLMLEGFGRLPVPEPAFDFLAERAGRWVALLSSASLGLDRPACFVSSRSLQGQPLQPIALVPGAVVHLRLP ARPGLGRLVSVPFVARQPDSLAFRAVWVERDGNREIVPVDLVDPVAADA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38992; Mature: 38860
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALGRLPLVAQDVECLVRHRLAAPELRVAVGQLVEPETILAMAADGLPRSARIALAAEL CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEECCCCCCCCCEEEEEECC GVAPADAARYLVRALGERVEAGEVVAVRRRGLRSQEVTSPIAGRLATLDAETGLLTVVTD CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHEEEEECCCCEEEEEEC PPRRAVPALVAGEVRSVADDAVTIRAIGDLLLGASLLGRESAGPLIVLADRPDRELPAEE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH FDERCRGAIVLAGMTVSSAALRRLHDVGAAGVIVGGLSTHALEPFWGSAAPTRLQRALVD HHHHHCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHCC PSADWPFPFGVLMLEGFGRLPVPEPAFDFLAERAGRWVALLSSASLGLDRPACFVSSRSL CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCC QGQPLQPIALVPGAVVHLRLPARPGLGRLVSVPFVARQPDSLAFRAVWVERDGNREIVPV CCCCCCCEEECCCEEEEEEECCCCCCCCEEECCEEECCCCCEEEEEEEEEECCCCCEEEE DLVDPVAADA ECCCCCCCCC >Mature Secondary Structure SALGRLPLVAQDVECLVRHRLAAPELRVAVGQLVEPETILAMAADGLPRSARIALAAEL CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEECCCCCCCCCEEEEEECC GVAPADAARYLVRALGERVEAGEVVAVRRRGLRSQEVTSPIAGRLATLDAETGLLTVVTD CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHEEEEECCCCEEEEEEC PPRRAVPALVAGEVRSVADDAVTIRAIGDLLLGASLLGRESAGPLIVLADRPDRELPAEE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH FDERCRGAIVLAGMTVSSAALRRLHDVGAAGVIVGGLSTHALEPFWGSAAPTRLQRALVD HHHHHCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHCC PSADWPFPFGVLMLEGFGRLPVPEPAFDFLAERAGRWVALLSSASLGLDRPACFVSSRSL CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCC QGQPLQPIALVPGAVVHLRLPARPGLGRLVSVPFVARQPDSLAFRAVWVERDGNREIVPV CCCCCCCEEECCCEEEEEEECCCCCCCCEEECCEEECCCCCEEEEEEEEEECCCCCEEEE DLVDPVAADA ECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA