| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is yjjG [C]
Identifier: 221633637
GI number: 221633637
Start: 1660263
End: 1661018
Strand: Reverse
Name: yjjG [C]
Synonym: trd_1663
Alternate gene names: 221633637
Gene position: 1661018-1660263 (Counterclockwise)
Preceding gene: 221633639
Following gene: 221633636
Centisome position: 82.93
GC content: 66.8
Gene sequence:
>756_bases ATGCCGATCCGGCTGGTCCTGTTCGATCTCGACGATACCCTGTGCGATCACCGGGGCTCGTTCCGTCTCCGGGTAGAGAC GGCGCTGGCTGCTCTTCCCGACGAGGTACTGTCCCTGGAACGCGACGTGATCGTGGCGCTGGCGCTGGCCCAGCCGAGCC ACACCTGGGAGGGAGTGCAGCGGGCACTGGAGATGGCCGGATGCACCGATCCCGCGTGGCTGGAGCGCGCGTCGGCGGTG TATGCGCGCGACCGGTTCTTGGGGCTTTCGCTCTTTCCGGACAGCGTGACGGCTGTCAGGGCGATCCAGCGTCGCGCTTT GACCGGACTCGTGACGAACGGACCGAGCGCGATTCAGCGGGCCAAGCTGGCCCGGCTGGGAATCGAGCGGTTGTTCCCGA TCGTCGTCGTCTCCGAGGAGATCGGTGTGGCCAAGCCGGACCCGGCGATCTTCCAGTATGCGCTCCGGCTGGCGGGTGTG CGTCCGGAAGAGGCGCTGTACGTGGGCGATCATCCGGTCAACGACGTGGCTGGAGCACAGCGTGCTGGGCTCACCAGTGT CTGGTGCAACCGGTACGGCCAAGCCTGGCAGGGGGATGTGGAGCCGCACTTCGGGGTGGCTTCGCTGTGGGAGCTCTATC GGGAATTGGAGGAATGGGCGAGCAGCGGGAGAGCGCTTTTCCCCGGGGGTATACTCGGTGAGAAACGGGGAGCGGCGCGT TCGCGAGGAGGCGACGATGACCGTAGCGACGGGTGA
Upstream 100 bases:
>100_bases ACTCCACCGTCCTCGTAGAGAGGATAACCGCTCACCCGTAGCCTGCTCGCTGGTCGATCCTGCTCTGACCGCGTAGGCTT GGGTGGGGTAGATGAGCAGC
Downstream 100 bases:
>100_bases GAAGCGAATCGTCCTCGCGGAAGTCATGGGTTACTGTTGGGGTGTGCGCCGAGCGTTGGAGATCATCCAGCAGGCTGCCC AAGCTGGCCCGATCGCGACG
Product: hydrolase, HAD superfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MPIRLVLFDLDDTLCDHRGSFRLRVETALAALPDEVLSLERDVIVALALAQPSHTWEGVQRALEMAGCTDPAWLERASAV YARDRFLGLSLFPDSVTAVRAIQRRALTGLVTNGPSAIQRAKLARLGIERLFPIVVVSEEIGVAKPDPAIFQYALRLAGV RPEEALYVGDHPVNDVAGAQRAGLTSVWCNRYGQAWQGDVEPHFGVASLWELYRELEEWASSGRALFPGGILGEKRGAAR SRGGDDDRSDG
Sequences:
>Translated_251_residues MPIRLVLFDLDDTLCDHRGSFRLRVETALAALPDEVLSLERDVIVALALAQPSHTWEGVQRALEMAGCTDPAWLERASAV YARDRFLGLSLFPDSVTAVRAIQRRALTGLVTNGPSAIQRAKLARLGIERLFPIVVVSEEIGVAKPDPAIFQYALRLAGV RPEEALYVGDHPVNDVAGAQRAGLTSVWCNRYGQAWQGDVEPHFGVASLWELYRELEEWASSGRALFPGGILGEKRGAAR SRGGDDDRSDG >Mature_250_residues PIRLVLFDLDDTLCDHRGSFRLRVETALAALPDEVLSLERDVIVALALAQPSHTWEGVQRALEMAGCTDPAWLERASAVY ARDRFLGLSLFPDSVTAVRAIQRRALTGLVTNGPSAIQRAKLARLGIERLFPIVVVSEEIGVAKPDPAIFQYALRLAGVR PEEALYVGDHPVNDVAGAQRAGLTSVWCNRYGQAWQGDVEPHFGVASLWELYRELEEWASSGRALFPGGILGEKRGAARS RGGDDDRSDG
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily [H]
Homologues:
Organism=Homo sapiens, GI23308749, Length=230, Percent_Identity=27.8260869565217, Blast_Score=79, Evalue=6e-15, Organism=Escherichia coli, GI1790833, Length=127, Percent_Identity=40.1574803149606, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789787, Length=215, Percent_Identity=31.1627906976744, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR011950 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 27429; Mature: 27298
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIRLVLFDLDDTLCDHRGSFRLRVETALAALPDEVLSLERDVIVALALAQPSHTWEGVQ CCEEEEEECCCHHHHCCCCCEEEEHHHHHHHCCHHHHHHHHHHHEEEEECCCCHHHHHHH RALEMAGCTDPAWLERASAVYARDRFLGLSLFPDSVTAVRAIQRRALTGLVTNGPSAIQR HHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHH AKLARLGIERLFPIVVVSEEIGVAKPDPAIFQYALRLAGVRPEEALYVGDHPVNDVAGAQ HHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCHH RAGLTSVWCNRYGQAWQGDVEPHFGVASLWELYRELEEWASSGRALFPGGILGEKRGAAR HCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC SRGGDDDRSDG CCCCCCCCCCC >Mature Secondary Structure PIRLVLFDLDDTLCDHRGSFRLRVETALAALPDEVLSLERDVIVALALAQPSHTWEGVQ CEEEEEECCCHHHHCCCCCEEEEHHHHHHHCCHHHHHHHHHHHEEEEECCCCHHHHHHH RALEMAGCTDPAWLERASAVYARDRFLGLSLFPDSVTAVRAIQRRALTGLVTNGPSAIQR HHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHH AKLARLGIERLFPIVVVSEEIGVAKPDPAIFQYALRLAGVRPEEALYVGDHPVNDVAGAQ HHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCHH RAGLTSVWCNRYGQAWQGDVEPHFGVASLWELYRELEEWASSGRALFPGGILGEKRGAAR HCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC SRGGDDDRSDG CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11930014 [H]