| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633488
Identifier: 221633488
GI number: 221633488
Start: 1490279
End: 1491241
Strand: Reverse
Name: 221633488
Synonym: trd_1510
Alternate gene names: NA
Gene position: 1491241-1490279 (Counterclockwise)
Preceding gene: 221633489
Following gene: 221633487
Centisome position: 74.45
GC content: 67.08
Gene sequence:
>963_bases TTGCAACTGGTCAGTTTCGCGCTGGTGGTTCTCTCGGTCCGTGCGATCGTGCGGGCCTGGCGTGCCCGACACCAACTCTT TGCTGAGCCGGTGACCGCTCAACAACTGGCGGTGCTCGTGGAATTAGCGCTTTTCGTGCTCGTACCGATCAGTGTCCTCG CGCACGAACTCGGACACGCGGTCGCGGTGTGGCTTTCCGGTGGACGCGTGATCGGCTTCGGGTACCTCCTATTTCTCGGC TGGGTCGAGTACACAGGCGTGACGAACCCGATCGCGCAGTTCTGGATCGCCTCGAGCGGCAATCTCGTGAGTTTGTTCCT CGCACTCGTCGCCATCGGGGCTGGCCTCTTCGCTCCGCTGCGCCGGCCGGTCGCCGCGCTGCTCTTGCCGGCCGGAGGCA TGATCCTGGCGACCACGCTGGTGTTCTACCCTGCACTCGATCTCGCGAGCGGTTTGCGGGGTGACTGGACGCAGCTTTAC AGTGGGCCGAGATCGGCCGCTCTCGTGCTCGGGGTACTGCATGGGGCGCTCCTACTCACTGGTTTCGCAGTATGGCGGAG TCGGTGGCTCCGCTGGCGCGTCTCGGCGCGGATCGGTCGGCCGTGGCGGCTGGACGAGCACGACCGGCGACTGCTCGCCT GGCGGCAACTGGCTGAGACCGCGGAGGAACTCGGGAAGCATGACGCGTCGCTGGCGGTCTCCGTTCAGGAGAACGGAGGG AGGCCCGAACTGCACCTTTCCTGGCGAGGAGCGAAGGGCCAGCGCTCGTTGCGGGCACGCATCGGTGAGCGGCCGGATGT GTTGGAGGTCGAAGCGCTGGCGGGGCAGCCGCCCGCGTTACGGGCAAGTTGGCGGGCACTCGTTCCGCCTGAAGCGCTCT TCGCCGGCCCGTCGCCTTTCCCCGCTCTCTTGCACCGCTTGCGCGCCGCGGCGGATGCGCTCGAGCCGGTGGGGGAGGAA TGA
Upstream 100 bases:
>100_bases GTCTCTGGGCGTACTCCGCGCCTCGTGACGGAGTAGACTGGAGAGAGCAGGACCAGGCGATCCTGCTGGACCGGACCGTT TCATGTGGAGTTTCCCGGCT
Downstream 100 bases:
>100_bases CATGCGACGGTGGTGGCGGCGCGATCGTGACCAGGATGAACGACCAGCCGTAGACCGACCGACCAACCAGCCCGAGCGGC CGGTCCGGGAGGCAGAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MQLVSFALVVLSVRAIVRAWRARHQLFAEPVTAQQLAVLVELALFVLVPISVLAHELGHAVAVWLSGGRVIGFGYLLFLG WVEYTGVTNPIAQFWIASSGNLVSLFLALVAIGAGLFAPLRRPVAALLLPAGGMILATTLVFYPALDLASGLRGDWTQLY SGPRSAALVLGVLHGALLLTGFAVWRSRWLRWRVSARIGRPWRLDEHDRRLLAWRQLAETAEELGKHDASLAVSVQENGG RPELHLSWRGAKGQRSLRARIGERPDVLEVEALAGQPPALRASWRALVPPEALFAGPSPFPALLHRLRAAADALEPVGEE
Sequences:
>Translated_320_residues MQLVSFALVVLSVRAIVRAWRARHQLFAEPVTAQQLAVLVELALFVLVPISVLAHELGHAVAVWLSGGRVIGFGYLLFLG WVEYTGVTNPIAQFWIASSGNLVSLFLALVAIGAGLFAPLRRPVAALLLPAGGMILATTLVFYPALDLASGLRGDWTQLY SGPRSAALVLGVLHGALLLTGFAVWRSRWLRWRVSARIGRPWRLDEHDRRLLAWRQLAETAEELGKHDASLAVSVQENGG RPELHLSWRGAKGQRSLRARIGERPDVLEVEALAGQPPALRASWRALVPPEALFAGPSPFPALLHRLRAAADALEPVGEE >Mature_320_residues MQLVSFALVVLSVRAIVRAWRARHQLFAEPVTAQQLAVLVELALFVLVPISVLAHELGHAVAVWLSGGRVIGFGYLLFLG WVEYTGVTNPIAQFWIASSGNLVSLFLALVAIGAGLFAPLRRPVAALLLPAGGMILATTLVFYPALDLASGLRGDWTQLY SGPRSAALVLGVLHGALLLTGFAVWRSRWLRWRVSARIGRPWRLDEHDRRLLAWRQLAETAEELGKHDASLAVSVQENGG RPELHLSWRGAKGQRSLRARIGERPDVLEVEALAGQPPALRASWRALVPPEALFAGPSPFPALLHRLRAAADALEPVGEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34817; Mature: 34817
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLVSFALVVLSVRAIVRAWRARHQLFAEPVTAQQLAVLVELALFVLVPISVLAHELGHA CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVWLSGGRVIGFGYLLFLGWVEYTGVTNPIAQFWIASSGNLVSLFLALVAIGAGLFAPL EEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RRPVAALLLPAGGMILATTLVFYPALDLASGLRGDWTQLYSGPRSAALVLGVLHGALLLT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH GFAVWRSRWLRWRVSARIGRPWRLDEHDRRLLAWRQLAETAEELGKHDASLAVSVQENGG HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC RPELHLSWRGAKGQRSLRARIGERPDVLEVEALAGQPPALRASWRALVPPEALFAGPSPF CCEEEEEECCCCCHHHHHHHCCCCCCCEEEHHHCCCCCCHHHCCHHCCCCHHHHCCCCCH PALLHRLRAAADALEPVGEE HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQLVSFALVVLSVRAIVRAWRARHQLFAEPVTAQQLAVLVELALFVLVPISVLAHELGHA CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVWLSGGRVIGFGYLLFLGWVEYTGVTNPIAQFWIASSGNLVSLFLALVAIGAGLFAPL EEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RRPVAALLLPAGGMILATTLVFYPALDLASGLRGDWTQLYSGPRSAALVLGVLHGALLLT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH GFAVWRSRWLRWRVSARIGRPWRLDEHDRRLLAWRQLAETAEELGKHDASLAVSVQENGG HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC RPELHLSWRGAKGQRSLRARIGERPDVLEVEALAGQPPALRASWRALVPPEALFAGPSPF CCEEEEEECCCCCHHHHHHHCCCCCCCEEEHHHCCCCCCHHHCCHHCCCCHHHHCCCCCH PALLHRLRAAADALEPVGEE HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA