Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221633327

Identifier: 221633327

GI number: 221633327

Start: 1339608

End: 1340513

Strand: Reverse

Name: 221633327

Synonym: trd_1347

Alternate gene names: NA

Gene position: 1340513-1339608 (Counterclockwise)

Preceding gene: 221633328

Following gene: 221633325

Centisome position: 66.93

GC content: 60.15

Gene sequence:

>906_bases
ATGGACGACATCAGCTTCTATGAGCACTTCGATCGTTGGCATTACGAACGCCTCTACAAGGAGGCATACCGCGGCTGGTA
CGACAACAATGGTTATTTCGACGCTCAGCTCGGCGATCTCAGCTATTGGGCGTGCTGGTTCTGGCATTACGTCAGATTCG
ATAAGCTGGAGACTCTCTCCGACGACGACTGGGAGTATCTGCGACGGGTGGCTCCTGATCTCGGGATGTGTCGGTTCGTC
TACCACTTCGGCACGCTTGGCGAGTACGGTTATCAGCTGGCGCGCGAGCTCGGCGTCGAAAAGTGGCTCGATCTCGCTTC
TGACGATCCGGGTGAACCGGATGGCGGCGATGCCGCAATCTGGCTCGGGCACAATGAGCCGGCTGGTTGCGACTGGGTGC
GCGAGTCGTTGGGAATCGTGTACACCCTGAGTGGGGACACAATGGTCGGCGACAAGCTCGGGATCACCGTCGAGGAGACC
CGCGGGTGTTGGCTCTGGGCGAAGCGAGCGATGGAGGCGCTGTCCAAGCTGGCTGATCCGGTCTACAGCGTTGACTCGCT
TCTCGAAGAAGTCATCACCGCCGATCCGTCTTTGCTCCGCGAACTCGGGCGTCCACTGCCCAACCTCGAGCTGGACTGGA
GGCAGGAAGAAGTCGGCTACGAGACGGTCATCAGCGTGATCGAGACCATGATCGAGGTGATCCGCTCGGTCGACCGTTAC
GCCATCCTCCGGCATCTTTTGCCGTACTTCGAGGAGTACCGCGAGTATCTGGTCAAAGTCTCGCTCGGTCAGATCGAGCA
GCCCGATGCCCGCGCCCTGATTCCGCGGAATGGCCCGCAGCTGGTCGCCGCCGCGCTGAATCTCGACGATCGCTTTATCG
AGTTCGCCTACAACCGCTACCGCTGA

Upstream 100 bases:

>100_bases
ATCCGCGAGCGAACTGCCCGGGACGGGAACACCTGTGTTCTCGCGCCGAGACGAGACTGACGATGACGGTCGGTCCGGAC
GAGCGCAAGGAGGACGCGCG

Downstream 100 bases:

>100_bases
TAGCGCTACCTGACTCAACGCTGACTGCCCGCGCCGGAGTGGCCCGGCTCGGGCAGTCAGGAGCGGCTGCCTACAGGTGC
GAGCGCCGGTCGCCGCAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDDISFYEHFDRWHYERLYKEAYRGWYDNNGYFDAQLGDLSYWACWFWHYVRFDKLETLSDDDWEYLRRVAPDLGMCRFV
YHFGTLGEYGYQLARELGVEKWLDLASDDPGEPDGGDAAIWLGHNEPAGCDWVRESLGIVYTLSGDTMVGDKLGITVEET
RGCWLWAKRAMEALSKLADPVYSVDSLLEEVITADPSLLRELGRPLPNLELDWRQEEVGYETVISVIETMIEVIRSVDRY
AILRHLLPYFEEYREYLVKVSLGQIEQPDARALIPRNGPQLVAAALNLDDRFIEFAYNRYR

Sequences:

>Translated_301_residues
MDDISFYEHFDRWHYERLYKEAYRGWYDNNGYFDAQLGDLSYWACWFWHYVRFDKLETLSDDDWEYLRRVAPDLGMCRFV
YHFGTLGEYGYQLARELGVEKWLDLASDDPGEPDGGDAAIWLGHNEPAGCDWVRESLGIVYTLSGDTMVGDKLGITVEET
RGCWLWAKRAMEALSKLADPVYSVDSLLEEVITADPSLLRELGRPLPNLELDWRQEEVGYETVISVIETMIEVIRSVDRY
AILRHLLPYFEEYREYLVKVSLGQIEQPDARALIPRNGPQLVAAALNLDDRFIEFAYNRYR
>Mature_301_residues
MDDISFYEHFDRWHYERLYKEAYRGWYDNNGYFDAQLGDLSYWACWFWHYVRFDKLETLSDDDWEYLRRVAPDLGMCRFV
YHFGTLGEYGYQLARELGVEKWLDLASDDPGEPDGGDAAIWLGHNEPAGCDWVRESLGIVYTLSGDTMVGDKLGITVEET
RGCWLWAKRAMEALSKLADPVYSVDSLLEEVITADPSLLRELGRPLPNLELDWRQEEVGYETVISVIETMIEVIRSVDRY
AILRHLLPYFEEYREYLVKVSLGQIEQPDARALIPRNGPQLVAAALNLDDRFIEFAYNRYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35206; Mature: 35206

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISFYEHFDRWHYERLYKEAYRGWYDNNGYFDAQLGDLSYWACWFWHYVRFDKLETLS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
DDDWEYLRRVAPDLGMCRFVYHFGTLGEYGYQLARELGVEKWLDLASDDPGEPDGGDAAI
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEEE
WLGHNEPAGCDWVRESLGIVYTLSGDTMVGDKLGITVEETRGCWLWAKRAMEALSKLADP
EECCCCCCCHHHHHHCCCEEEEECCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
VYSVDSLLEEVITADPSLLRELGRPLPNLELDWRQEEVGYETVISVIETMIEVIRSVDRY
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
AILRHLLPYFEEYREYLVKVSLGQIEQPDARALIPRNGPQLVAAALNLDDRFIEFAYNRY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHHHC
R
C
>Mature Secondary Structure
MDDISFYEHFDRWHYERLYKEAYRGWYDNNGYFDAQLGDLSYWACWFWHYVRFDKLETLS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
DDDWEYLRRVAPDLGMCRFVYHFGTLGEYGYQLARELGVEKWLDLASDDPGEPDGGDAAI
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEEE
WLGHNEPAGCDWVRESLGIVYTLSGDTMVGDKLGITVEETRGCWLWAKRAMEALSKLADP
EECCCCCCCHHHHHHCCCEEEEECCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
VYSVDSLLEEVITADPSLLRELGRPLPNLELDWRQEEVGYETVISVIETMIEVIRSVDRY
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
AILRHLLPYFEEYREYLVKVSLGQIEQPDARALIPRNGPQLVAAALNLDDRFIEFAYNRY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA