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The map label for this gene is 221633328

Identifier: 221633328

GI number: 221633328

Start: 1340997

End: 1341350

Strand: Reverse

Name: 221633328

Synonym: trd_1348

Alternate gene names: NA

Gene position: 1341350-1340997 (Counterclockwise)

Preceding gene: 221633329

Following gene: 221633327

Centisome position: 66.97

GC content: 63.84

Gene sequence:

>354_bases
ATGATGGGCCAGGCGGTCGATACGCGTTCGCTTCCCGTCATGCCGTTCGGCCCATTCACCTTGCGGCCGTTCGCCGGCGA
TCAGCTCATGCTCGTCCGCGTGGAGGCACCAGCCGGGGCGAAGACGCCGGCGCATGCTCATCCGCACGAACAGATGTGTC
TCGTCATCAGTGGCCGGCTGCGCTTCCGCATCGGTGACGAGGAGCGGGTGCTCGGGCCGTTCGAGGCGATCCATATTCCT
TCGGGTATGGAACACGAGGCAGAGGCGCTCGAAGCGGTCGTCTTTTACGATATCTTTCATCCGGTTCGGGAGGACTATCT
GGAGCGGCTCGCTGCGTCCGACGAGTGCGCCTGA

Upstream 100 bases:

>100_bases
GTTTGGCCATCGCTCAGCAACATGGTCGAAGCCGCGCGCCGACTCCGCGCGCGCTTCACAGCGCAGGGCCAGTGAAGCTG
AGGAACTGCTCACGGGGGCG

Downstream 100 bases:

>100_bases
GGAGCGAGGAGCAGCCGATCGGTTGGCTGACTCTTGGTGGTAGGTGGCAGGCTCGCAGGCGAGCGGACCCGATCGCGGGC
GCGAGACCCTGGGGATGTCA

Product: degradation protein

Products: NA

Alternate protein names: Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Pectin Degradation Protein KdgF; Cupin Domain Protein; Cupin Superfamily Barrel Domain-Containing Protein; Degradation Protein

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MMGQAVDTRSLPVMPFGPFTLRPFAGDQLMLVRVEAPAGAKTPAHAHPHEQMCLVISGRLRFRIGDEERVLGPFEAIHIP
SGMEHEAEALEAVVFYDIFHPVREDYLERLAASDECA

Sequences:

>Translated_117_residues
MMGQAVDTRSLPVMPFGPFTLRPFAGDQLMLVRVEAPAGAKTPAHAHPHEQMCLVISGRLRFRIGDEERVLGPFEAIHIP
SGMEHEAEALEAVVFYDIFHPVREDYLERLAASDECA
>Mature_117_residues
MMGQAVDTRSLPVMPFGPFTLRPFAGDQLMLVRVEAPAGAKTPAHAHPHEQMCLVISGRLRFRIGDEERVLGPFEAIHIP
SGMEHEAEALEAVVFYDIFHPVREDYLERLAASDECA

Specific function: Unknown

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13013; Mature: 13013

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGQAVDTRSLPVMPFGPFTLRPFAGDQLMLVRVEAPAGAKTPAHAHPHEQMCLVISGRL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECEE
RFRIGDEERVLGPFEAIHIPSGMEHEAEALEAVVFYDIFHPVREDYLERLAASDECA
EEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMGQAVDTRSLPVMPFGPFTLRPFAGDQLMLVRVEAPAGAKTPAHAHPHEQMCLVISGRL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECEE
RFRIGDEERVLGPFEAIHIPSGMEHEAEALEAVVFYDIFHPVREDYLERLAASDECA
EEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA