| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633300
Identifier: 221633300
GI number: 221633300
Start: 1311957
End: 1312844
Strand: Reverse
Name: 221633300
Synonym: trd_1320
Alternate gene names: NA
Gene position: 1312844-1311957 (Counterclockwise)
Preceding gene: 221633302
Following gene: 221633299
Centisome position: 65.54
GC content: 58.9
Gene sequence:
>888_bases GTGAACCCGGTCGTCGATCGGGAAATTGCTGCAGTCAGCGCGAATTCTTCCGATCCTCGTGATGCCGGATCGGCTCGAGT GAGTGAAGAGGACGATAGACATATTCTGGAGGTCTCATCGGTGGAATCGACGACGGTTTCGACGCAGCCTCTCGACGATA TTCGCGACGAGGTGCGGCGCGTGCTCGAGGCAGCTGAGGCGCGTGGCGTGACCCTTCGGGTTCTCGGTGGTGTCGCCGTC TTTTTGCACTCGCCGAGTGCGTCTCACCGTGCGCTGCAACGTGTCTATCGTGATGCTGATTTCGTTGGGTTGTCGGCGCA GAAGCGTGCGATCGAGGCGCTCTTCGCTGATCTCGGGTATCAAGCGGATCGCGAATTCAATACACTGCATGGTCACCAGC GGCTCTTCTTCTGGGATCCGCTGCACGAGCGGCAGATCGATGTCTTCCTCGATCAGTTGCGCATGTGCCACACCCTGGAC TTTCGTGGCCGGCTGGAGCGGGATCGCTGGACGCTTCCGCTTGCCGACTTGCTTTTGACCAAGCTGCAGATCTGGGAGGC GAACGAAAAGGATCTGATCGATATCGTCGCTCTGCTTCATGATCATCCGCTTGGGTACGGCGATGAGGAGACGATCGATA TTCGCCGTATCGTGGATGTCTTGAGCACGGACTGGGGTTGGTATCGCACGGCAAAGGAGAACGTCGATCGGGTTCGGACG CTGATCCTCGAGCGAGAACTCGCTGACGAGTTCGTCTCCTTGCGGCGGCTCGAAGAATTATGGCGTGCCGTCGAAGAGGC ACCGAAGAGTCGTGCCTGGAAACTGCGCGCGATGATCGGTGAACGAAAGCGCTGGTACGAGTTGCCGGAGGAAGTCCGGC GCGACTGA
Upstream 100 bases:
>100_bases CGTTTCGGCTCGTTGCGCTGGTGAGTCGGATGGTGAATCGGGTATGGGCAGTTCCTCGTTTGTATGGTGCGGGAATGTAT CCTATACTTGGCTGAGTCAG
Downstream 100 bases:
>100_bases GCACCGGTCTGGGCAGGACGGGAGTGACATGGTCTGGTTCCGGAAAGGAAAAGGCCAAGCGACGCGTCGCTTGGCGCTCT ACTATACGAGTGACATACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MNPVVDREIAAVSANSSDPRDAGSARVSEEDDRHILEVSSVESTTVSTQPLDDIRDEVRRVLEAAEARGVTLRVLGGVAV FLHSPSASHRALQRVYRDADFVGLSAQKRAIEALFADLGYQADREFNTLHGHQRLFFWDPLHERQIDVFLDQLRMCHTLD FRGRLERDRWTLPLADLLLTKLQIWEANEKDLIDIVALLHDHPLGYGDEETIDIRRIVDVLSTDWGWYRTAKENVDRVRT LILERELADEFVSLRRLEELWRAVEEAPKSRAWKLRAMIGERKRWYELPEEVRRD
Sequences:
>Translated_295_residues MNPVVDREIAAVSANSSDPRDAGSARVSEEDDRHILEVSSVESTTVSTQPLDDIRDEVRRVLEAAEARGVTLRVLGGVAV FLHSPSASHRALQRVYRDADFVGLSAQKRAIEALFADLGYQADREFNTLHGHQRLFFWDPLHERQIDVFLDQLRMCHTLD FRGRLERDRWTLPLADLLLTKLQIWEANEKDLIDIVALLHDHPLGYGDEETIDIRRIVDVLSTDWGWYRTAKENVDRVRT LILERELADEFVSLRRLEELWRAVEEAPKSRAWKLRAMIGERKRWYELPEEVRRD >Mature_295_residues MNPVVDREIAAVSANSSDPRDAGSARVSEEDDRHILEVSSVESTTVSTQPLDDIRDEVRRVLEAAEARGVTLRVLGGVAV FLHSPSASHRALQRVYRDADFVGLSAQKRAIEALFADLGYQADREFNTLHGHQRLFFWDPLHERQIDVFLDQLRMCHTLD FRGRLERDRWTLPLADLLLTKLQIWEANEKDLIDIVALLHDHPLGYGDEETIDIRRIVDVLSTDWGWYRTAKENVDRVRT LILERELADEFVSLRRLEELWRAVEEAPKSRAWKLRAMIGERKRWYELPEEVRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34270; Mature: 34270
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPVVDREIAAVSANSSDPRDAGSARVSEEDDRHILEVSSVESTTVSTQPLDDIRDEVRR CCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH VLEAAEARGVTLRVLGGVAVFLHSPSASHRALQRVYRDADFVGLSAQKRAIEALFADLGY HHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC QADREFNTLHGHQRLFFWDPLHERQIDVFLDQLRMCHTLDFRGRLERDRWTLPLADLLLT CCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH KLQIWEANEKDLIDIVALLHDHPLGYGDEETIDIRRIVDVLSTDWGWYRTAKENVDRVRT HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LILERELADEFVSLRRLEELWRAVEEAPKSRAWKLRAMIGERKRWYELPEEVRRD HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure MNPVVDREIAAVSANSSDPRDAGSARVSEEDDRHILEVSSVESTTVSTQPLDDIRDEVRR CCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH VLEAAEARGVTLRVLGGVAVFLHSPSASHRALQRVYRDADFVGLSAQKRAIEALFADLGY HHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC QADREFNTLHGHQRLFFWDPLHERQIDVFLDQLRMCHTLDFRGRLERDRWTLPLADLLLT CCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH KLQIWEANEKDLIDIVALLHDHPLGYGDEETIDIRRIVDVLSTDWGWYRTAKENVDRVRT HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LILERELADEFVSLRRLEELWRAVEEAPKSRAWKLRAMIGERKRWYELPEEVRRD HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA